Gene Information

Name : troB (Curi_c03520)
Accession : YP_006787274.1
Strain : Clostridium acidurici 9a
Genome accession: NC_018664
Putative virulence/resistance : Virulence
Product : zinc transport system ATP-binding protein TroB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 376012 - 376725 bp
Length : 714 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTAAAATAATAAAAGTTGAAGACTTAACAGTTGCTTATGAAGAAAAGCCTGTTTTGTGGGATATAAATTTAGAAAT
ACCTTCAGGAATATTAATGGCTATAGTAGGGCCTAACGGAGCAGGAAAGTCGACACTTATTAAAACTATGCTGAATCTGA
TAAAACCAGTAGCTGGAAGAGTAACATTCTGGGGTAGTCCTTATGAAGAAATGATAAAAAATATAGCTTATGTACCACAA
AGAGGGTCAGTAGATTGGGACTTTCCAACGAATGTATATGATGTAGTAATGATGGGGAGATATGGAGACCTAGGATGGTT
CAAAAGACCGAAGAGATTAGATAAAGTACTTACGATAGAAGCAATTGAGAAAGTAGGTATGACTGAATTCTCAGACAGAC
AAATTAGTCAACTATCAGGAGGACAGCAACAGAGAGTGTTTTTAGCAAGAGCTTTAGCACAAAGTGCTGAAATTTACTTC
ATGGATGAACCTTTCCAAGGAGTAGATGCAAAGACAGAAGAAGCTATAATAAATTTATTAAAAGAACTTCGTTCTCAAGG
AAAAACAGTAGTAGTAGTACATCATGATTTACAAACAGTAGATAAGTACTTTGACTATGTTACATTGTTAAATAAGAAAG
TAATAGAATCAGGGCCTGTAAAAGAAGTATTTACTGATGAAAAAATATTAAAGACTTATGCTGTTAATAACTAA

Protein sequence : 
MSKIIKVEDLTVAYEEKPVLWDINLEIPSGILMAIVGPNGAGKSTLIKTMLNLIKPVAGRVTFWGSPYEEMIKNIAYVPQ
RGSVDWDFPTNVYDVVMMGRYGDLGWFKRPKRLDKVLTIEAIEKVGMTEFSDRQISQLSGGQQQRVFLARALAQSAEIYF
MDEPFQGVDAKTEEAIINLLKELRSQGKTVVVVHHDLQTVDKYFDYVTLLNKKVIESGPVKEVFTDEKILKTYAVNN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 8e-48 48
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 1e-47 48
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-50 44
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-50 44
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-51 44
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 4e-51 44
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 3e-51 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
troB YP_006787274.1 zinc transport system ATP-binding protein TroB BAC0400 Protein 2e-69 60
troB YP_006787274.1 zinc transport system ATP-binding protein TroB BAC0440 Protein 4e-51 46
troB YP_006787274.1 zinc transport system ATP-binding protein TroB BAC0350 Protein 2e-51 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
troB YP_006787274.1 zinc transport system ATP-binding protein TroB VFG0526 Protein 2e-51 44