Gene Information

Name : phoP1 (Curi_c13140)
Accession : YP_006788172.1
Strain : Clostridium acidurici 9a
Genome accession: NC_018664
Putative virulence/resistance : Virulence
Product : alkaline phosphatase synthesis transcriptional regulatory protein PhoP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1414475 - 1415173 bp
Length : 699 bp
Strand : +
Note : -

DNA sequence : 
ATGAATTACGCAAAGATCCTTGTAGTTGATGATGAAGATCACATAGTAGAACTTATAAAATTTAATTTAGAAAGCAATGG
ATATGATGTAGTAACAGCTAATGACGGACAGGAAGCAGTGTTTAAGTCTAAAACAGAGAATCCAGATCTCATAATATTAG
ATTTAATGCTCCCTAAAGTAGATGGTATAGAGGTATGTAGAAAAATAAAAGGAGATCCTGAAACTTCACATATTGCTATT
ATAATGTTGACTGCTAAAAGTGATGAAGCAGACAAAATTGTAGGACTTGAAATAGGTGCAGATGATTATATAACTAAGCC
TTTTAGTGTAAGAGAGCTTATAGCACGAATAAAAGCTGTACTTAGAAGAAATCCAAACAATAAGTCTGGAGATTATACAG
AAAATATTTTAAAAATAGGAGATATAGTTATTGATGATGAAAAACATGAAGTAACTAAAGATGGTAAAAAAGTAGACTTA
ACATTAAAAGAATTTGAGTTATTAAGAATACTAGCTAAAAACAAGGGAAAAGTTCTTTCAAGGAATTTTTTGTTAGATGA
GGTATGGGGATACGACTATTTTGGTGAGACTAGAACGGTGGATGTTCATATTAGACATATAAGAAAAAAGATAGAAAATG
ATGATAGCAGACCAGAATATATAGAAACCATTAGAGGAATAGGATATAAAATGAAATAA

Protein sequence : 
MNYAKILVVDDEDHIVELIKFNLESNGYDVVTANDGQEAVFKSKTENPDLIILDLMLPKVDGIEVCRKIKGDPETSHIAI
IMLTAKSDEADKIVGLEIGADDYITKPFSVRELIARIKAVLRRNPNNKSGDYTENILKIGDIVIDDEKHEVTKDGKKVDL
TLKEFELLRILAKNKGKVLSRNFLLDEVWGYDYFGETRTVDVHIRHIRKKIENDDSRPEYIETIRGIGYKMK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-41 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 3e-41 42
vanRB YP_001698483.1 regulatory protein Not tested Not named Protein 3e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP HE999704.1.gene2815. Protein 8e-55 55
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_012469.1.7685629. Protein 2e-54 53
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_002952.2859905.p0 Protein 5e-55 51
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_009782.5559369.p0 Protein 3e-55 51
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_002951.3237708.p0 Protein 3e-55 51
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_003923.1003749.p0 Protein 3e-55 51
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_002758.1121668.p0 Protein 3e-55 51
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_009641.5332272.p0 Protein 3e-55 51
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_013450.8614421.p0 Protein 3e-55 51
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_007793.3914279.p0 Protein 3e-55 51
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_007622.3794472.p0 Protein 4e-55 51
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_002745.1124361.p0 Protein 3e-55 51
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_012469.1.7686381. Protein 1e-48 47
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP AE016830.1.gene1681. Protein 3e-48 47
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_002951.3238224.p0 Protein 1e-42 45
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_007793.3914065.p0 Protein 1e-42 45
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_002758.1121390.p0 Protein 1e-42 45
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_010079.5776364.p0 Protein 1e-42 45
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_002952.2859858.p0 Protein 1e-42 45
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_007622.3794948.p0 Protein 1e-42 45
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_003923.1003417.p0 Protein 1e-42 45
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_013450.8614146.p0 Protein 1e-42 45
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP DQ212986.1.gene4.p01 Protein 5e-39 45
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_014475.1.orf0.gen Protein 1e-42 45
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP NC_005054.2598277.p0 Protein 1e-42 45
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP FJ349556.1.orf0.gene Protein 8e-43 44
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP AE015929.1.gene1106. Protein 1e-38 43
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP AF155139.2.orf0.gene Protein 1e-41 43
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP AE000516.2.gene3505. Protein 5e-43 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP VFG1563 Protein 1e-41 42
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP VFG1702 Protein 1e-41 42
phoP1 YP_006788172.1 alkaline phosphatase synthesis transcriptional regulatory protein PhoP VFG1386 Protein 7e-41 41