Gene Information

Name : O3K_21970 (O3K_21970)
Accession : YP_006781056.1
Strain : Escherichia coli 2011C-3493
Genome accession: NC_018658
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4541872 - 4542279 bp
Length : 408 bp
Strand : +
Note : COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit

DNA sequence : 
ATGACTATGTACGCAAAATCCTTTATCGCTCTTGATGGCAACGGACGTCTGACGGGCGCCCGTACTGCACAGGCCGCACC
TTATGCTAACTACACCTGCCACTTGTGTGGCAGTGCACTCAGATACCATCCGCAATACGACACTGAACTTCCCTGGTTTG
AACACACTGACGACAGGCTGACAGAGCACGGTCAACAGTGCCCTTATGTCAGGCCGGAGCGCAGAGAAATACAGTTGATT
AAACGTCTGCAGCAATTCGTACCGGATGCCTTACCCGTGGTGCGTAAAGCCAGCTGGCACTGCAGACAATGTCACCACGA
TTATTATGGGGAGCAGTACTGCACACACTGCCAGACCGGAGGATTCAGTATTCCCCGGACAACTCAGGAGGAAATATGCG
AATTCTGA

Protein sequence : 
MTMYAKSFIALDGNGRLTGARTAQAAPYANYTCHLCGSALRYHPQYDTELPWFEHTDDRLTEHGQQCPYVRPERREIQLI
KRLQQFVPDALPVVRKASWHCRQCHHDYYGEQYCTHCQTGGFSIPRTTQEEICEF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_1083 YP_853103.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 1e-60 99
ECO103_3572 YP_003223433.1 hypothetical protein Not tested LEE Protein 9e-52 94
unnamed CAI43833.1 hypothetical protein Not tested LEE Protein 2e-57 93
unnamed ADD91715.1 hypothetical protein Not tested PAI-I AL862 Protein 3e-56 91
S3186 NP_838469.1 hypothetical protein Not tested SHI-1 Protein 2e-50 90
SF2981 NP_708755.1 hypothetical protein Not tested SHI-1 Protein 2e-50 90
unnamed CAE85181.1 hypothetical protein Not tested PAI V 536 Protein 1e-47 90
unnamed AAK00467.1 unknown Not tested SHI-1 Protein 1e-50 90
aec60 AAW51743.1 Aec60 Not tested AGI-3 Protein 5e-51 89

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
O3K_21970 YP_006781056.1 hypothetical protein VFG0645 Protein 5e-51 90