Gene Information

Name : O3M_23040 (O3M_23040)
Accession : YP_006772216.1
Strain : Escherichia coli 2009EL-2050
Genome accession: NC_018650
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4750620 - 4751744 bp
Length : 1125 bp
Strand : -
Note : COG4584 Transposase and inactivated derivatives

DNA sequence :
ATGCTCACTTTTGAGACAGTTATGGAAATTAAAATCCTGCACAAGCAGGGAATGAGTAGCCGGGCGATTGCCAGAGAACT
GGGGATCTCCCGCAATACCGTTAAACGTTATTTGCAGGCAAAATCTGAGCCGCCAAAATATACGCCGCGACCTGCTGTTG
CTTCACTCCTGGATGAATACCGGGATTATATTCGTCAACGCATCGCCGATGCTCATCCTTACAAAATCCCGGCAACGGTA
ATCGCTCGCGAGATCAGAGACCAGGGATATCGTGGTGGAATGACCATTCTCAGGGCATTCATTCGTTCTCTCTCGGTTCC
TCAGGAGCAGGAGCCTGCCGTTCGGTTCGAAACTGAACCCGGACGACAGATGCAGGTTGACTGGGGCACTATGCGTAATG
GTCGCTCACCGCTTCACGTGTTCGTTGCTGTTCTCGGATACAGCCGAATGCTGTACATCGAATTCACTGACAATATGCGT
TATGACACGCTGGAGACCTGCCATCGTAATGCGTTCCGCTTCTTTGGTGGTGTGCCGCGCGAAGTGTTGTATGACAATAT
GAAAACTGTGGTTCTGCAACGTGACGCATATCAGACCGGTCAGCACCGGTTCCATCCTTCGCTGTGGCAGTTCGGCAAGG
AGATGGGCTTCTCTCCCCGACTGTGTCGCCCCTTCAGGGCACAGACTAAAGGTAAGGTGGAACGGATGGTGCAGTACACC
CGTAACAGTTTTTACATCCCACTAATGACTCGCCTGCGCCCGATGGGGATCACTGTCGATGTTGAAACAGCCAACCGCCA
CGGTCTGCGCTGGCTGCACGATGTCGCTAACCAACGAAAGCATGAAACAATCCAGGCACGTCCCTGCGATCGCTGGCTCG
AAGAGCAGCAGTCCATGCTGGCACTGCCTCCGGAGAAAAAAGAGTATGACGTGCATCTTGATGAAAATCTGGTGAACTTC
GACAAACACCCCCTGCATCATCCACTCTCCATCTACGACTCATTCTGCAGAAGGCGGCGCGTTGACGGAAGCAGGATGCT
GGGCTCATGCACGGCGCAAAATCCACGATGTATATATCAGTACCAAAAGCGCGACGGCGGAAGAAGCACTGAAACTAATC
GGTGA

Protein sequence :
MLTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATV
IAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMR
YDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYT
RNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNF
DKHPLHHPLSIYDSFCRRRRVDGSRMLGSCTAQNPRCIYQYQKRDGGRSTETNR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 2e-161 99
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 5e-162 99
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 5e-162 99
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 5e-162 99
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 4e-163 99
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 5e-162 99
y2411 NP_669718.1 transposase Not tested HPI Protein 4e-163 99
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 3e-163 99
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 4e-163 99
api83 CAF28557.1 transposase Not tested YAPI Protein 3e-163 99
unnamed CAA21403.1 - Not tested HPI Protein 4e-163 99
unnamed AAG37051.1 unknown Not tested espC PAI Protein 2e-153 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
O3M_23040 YP_006772216.1 transposase VFG1514 Protein 3e-162 99
O3M_23040 YP_006772216.1 transposase VFG1626 Protein 3e-162 99
O3M_23040 YP_006772216.1 transposase VFG1607 Protein 3e-162 99
O3M_23040 YP_006772216.1 transposase VFG1461 Protein 1e-161 99
O3M_23040 YP_006772216.1 transposase VFG0780 Protein 1e-153 96