Gene Information

Name : O3M_01165 (O3M_01165)
Accession : YP_006767916.1
Strain : Escherichia coli 2009EL-2050
Genome accession: NC_018650
Putative virulence/resistance : Virulence
Product : long polar fimbrial chaperone LpfB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 224670 - 225356 bp
Length : 687 bp
Strand : +
Note : COG3121 P pilus assembly protein, chaperone PapD

DNA sequence : 
ATGAAACGTATTAGCTTTGCTGTGCTGGCACTTTTAATGACCGCACAACAGTGTTTTGCTGGTGGCGTAGCCTTAAGCAC
GACGCGTGTTATTTATGATGGCGGCAAGAAAGAAGCGTCGCTGACCGTTGAAAACCATAATAAAAATGAAGAGTTTTTGA
TCCAGTCATGGATTGATGATGTGAATGGCAATAAAAAAACACCGTTTATTATTACACCGCCATTATTCAAACTTGATCCT
GATAAAAATAACGTCTTACGTATCGTCAATATTGAAGATACCTTACCTAAAGATCGTGAATCCGTTTACTGGATTAATGT
AAAGGCCATTCCTGCGAAAAGTGCTGAAAATGAAAATAAAAACGTCTTACAGATAGCCGTTCGCACCCGTTTGAAGTTGT
TCTATCGTCCAAAAGGTTTGCCGGGAAGCAACCTCGAGGCCATGAAACAGTTACGTTTCCAGCGTCAAAATAACCAAATT
GTGGTTAATAACGACTCCGCTTATAACCTGACCTTTAATCAGTTTTCCATTAATGGACAAAAGATTGAACGGGCGGGAAT
GGTTCTCGCGAAAGGAAAGTTAAACATTAACCTTCCAGCCGGTACAGGCAACGCGCACGAAGTGAAATACAGCATTATTA
ATGATTTCGGTGTTGCTGGCGAAATGCTGACGAAGCCGATTAACTGA

Protein sequence : 
MKRISFAVLALLMTAQQCFAGGVALSTTRVIYDGGKKEASLTVENHNKNEEFLIQSWIDDVNGNKKTPFIITPPLFKLDP
DKNNVLRIVNIEDTLPKDRESVYWINVKAIPAKSAENENKNVLQIAVRTRLKLFYRPKGLPGSNLEAMKQLRFQRQNNQI
VVNNDSAYNLTFNQFSINGQKIERAGMVLAKGKLNINLPAGTGNAHEVKYSIINDFGVAGEMLTKPIN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 4e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
O3M_01165 YP_006767916.1 long polar fimbrial chaperone LpfB VFG0455 Protein 4e-74 70
O3M_01165 YP_006767916.1 long polar fimbrial chaperone LpfB VFG0445 Protein 3e-42 42
O3M_01165 YP_006767916.1 long polar fimbrial chaperone LpfB VFG1644 Protein 2e-39 41
O3M_01165 YP_006767916.1 long polar fimbrial chaperone LpfB VFG0911 Protein 2e-39 41