Gene Information

Name : O3M_05210 (O3M_05210)
Accession : YP_006768714.1
Strain : Escherichia coli 2009EL-2050
Genome accession: NC_018650
Putative virulence/resistance : Virulence
Product : type III secretion protein EpaQ
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1066862 - 1067122 bp
Length : 261 bp
Strand : +
Note : COG4794 Type III secretory pathway, component EscS

DNA sequence :
ATGAACGATATTGTTTTTGCAGGGAATAGGGCGCTGTATCTGATTTTAGTTATGTCTGCAGGACCTATCGCAGTTGCGAC
ATTTGTTGGTTTATTGGTAGGGCTTTTTCAAACGGTAACACAGTTACAAGAACAGACGTTGCCATTTGGCGTCAAATTAT
TATGCGTAAGTATTTGCTTTTTTTTAATGAGCGGATGGTATGGTGAAAAATTATATTCGTTTGGTATCGAAATGCTGAAT
TTAGCATTCGCGAGAGGATAG

Protein sequence :
MNDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICFFLMSGWYGEKLYSFGIEMLN
LAFARG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
epaQ AAZ31292.1 EpaQ Virulence ETT2 Protein 4e-35 100
ECs3724 NP_311751.1 EpaQ Not tested LIM Protein 7e-35 99
spaQ YP_217808.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 8e-23 68
spaQ NP_457283.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 8e-23 68
spaQ NP_806492.1 virulence-associated secretory protein Virulence SPI-1 Protein 8e-23 68
spaQ AAS66866.1 SpaQ Not tested SSR-2 Protein 1e-25 68
spaQ NP_461810.1 needle complex export protein Virulence SPI-1 Protein 8e-23 68
ysaS AAS66847.1 YsaS Not tested SSR-1 Protein 3e-15 52
lscS AAO18039.1 LscS Virulence TTSS locus Protein 2e-11 45
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 1e-10 44
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 1e-09 42
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 1e-09 42
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 1e-09 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
O3M_05210 YP_006768714.1 type III secretion protein EpaQ VFG0550 Protein 2e-23 68
O3M_05210 YP_006768714.1 type III secretion protein EpaQ VFG1013 Protein 4e-18 67
O3M_05210 YP_006768714.1 type III secretion protein EpaQ VFG2454 Protein 2e-15 55
O3M_05210 YP_006768714.1 type III secretion protein EpaQ VFG1772 Protein 3e-19 53
O3M_05210 YP_006768714.1 type III secretion protein EpaQ VFG0043 Protein 9e-11 46
O3M_05210 YP_006768714.1 type III secretion protein EpaQ VFG0395 Protein 4e-12 46
O3M_05210 YP_006768714.1 type III secretion protein EpaQ VFG0187 Protein 5e-08 44