Gene Information

Name : LFML04_0012 (LFML04_0012)
Accession : YP_006765226.1
Strain : Leptospirillum ferriphilum ML-04
Genome accession: NC_018649
Putative virulence/resistance : Unknown
Product : phage integrase family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 12848 - 13909 bp
Length : 1062 bp
Strand : +
Note : -

DNA sequence :
ATGGGAGTCTATCCCGAGACCTCTCTGAGGGAGGCGCGAGAACGTCGTGATGAGGCCAAAAAGAAGATCGAGTCCGGGAT
CGATCCTTCTCATGCGAGAAAAGCCAAGAAGGAAAGCGACTCTGGGGCGGATACCTTCGAGACGATTGCCCGAGAGTGGT
TCGAGAAGTTTTCTCCGACCTGGTCCCCTTCCCATGGGGATCGGATCATCCGGAGATTGGAGAGGGATATTTTTCCCTGG
CTTGGAAAGCGTTCCATCAAAGATATCAAGGCTCCAGAGTTCTTGGCCGTTCTCCGGAGGATCGAATCGCGGGGAGCAGT
CGAGACGGCACACCGGGCCTCTCAAAATTGCGGACAAGTCTTCCGATATGCAGCGGCGATGGGACGAACAGAGGGGGATC
CGTCAGGAGATCTTCGGGGGGCCATTCCTCCGACAACGACAAAGCATCATGCCTCCATTACAGATCCCAAAGAAATCGGA
GGGCTCCTCCGGGCGATCGACTCCTATGAAGGGGGATTGGTTGTCCGGTGTGCATTGAAGCTAGCTCCTCTCGTCTTTGT
GAGGCCGGGGGAGCTGAGGCGCGCGGAGTGGTCGGAGATCGACTTCGAGAAAATGGAGTGGAGGATCCCTGCTGAAAAGA
TGAAGATGCGGGAACAACATATTGTCCCCCTCTCCCGTCAGGCCCTTGGGATCCTCCGGGAGCTTCAGCCATTGACCGGG
GAAGGAAAGTATCTCTTCCCCTCTCCTCGCTCCTGGGATCGGCCTATGAGCGAAAATGCCGTTCTTGCAGCGCTACGCCG
GATGGGGTATTCGGGAGATCAGATGACAGGACATGGTTTCAGAAGTATGGCTTCAACAATTTTGATTGAACAGGGCTGGA
ATCGGGATGCGATCGAGCGGCAACTGGCCCATGCGGAGCGGGATGAGATCCGTGCGGCCTACAACTATGCCCAGCATCTT
CCGGAGAGACGAAAGATGATGCAGGCATGGGCGAATTATCTTGACGAGTTGAGAATTGATGGGCAGATCTTGCCATTCAA
AACCAAAGAGGGGATGAAGTGA

Protein sequence :
MGVYPETSLREARERRDEAKKKIESGIDPSHARKAKKESDSGADTFETIAREWFEKFSPTWSPSHGDRIIRRLERDIFPW
LGKRSIKDIKAPEFLAVLRRIESRGAVETAHRASQNCGQVFRYAAAMGRTEGDPSGDLRGAIPPTTTKHHASITDPKEIG
GLLRAIDSYEGGLVVRCALKLAPLVFVRPGELRRAEWSEIDFEKMEWRIPAEKMKMREQHIVPLSRQALGILRELQPLTG
EGKYLFPSPRSWDRPMSENAVLAALRRMGYSGDQMTGHGFRSMASTILIEQGWNRDAIERQLAHAERDEIRAAYNYAQHL
PERRKMMQAWANYLDELRIDGQILPFKTKEGMK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 2e-62 44
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 8e-57 44
int AAL51003.1 CP4-like integrase Not tested LEE Protein 8e-57 44
int AAK16198.1 Int Not tested PAI-I AL862 Protein 3e-57 44
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 3e-57 44
int AAK00456.1 Int Not tested SHI-1 Protein 1e-57 43
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 8e-60 43
int CAC81896.1 integrase Not tested LEE II Protein 2e-56 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-57 43
int ACU09430.1 integrase Not tested LEE Protein 2e-57 43
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 7e-57 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 3e-57 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 3e-57 43
int CAC39282.1 integrase Not tested LPA Protein 1e-57 43
int AAD44730.1 Int Not tested SHI-2 Protein 4e-57 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 9e-58 43
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-57 43
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-57 43
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-57 43
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 5e-57 43
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 3e-57 43
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 6e-57 43
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 3e-56 43
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 8e-57 43
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 8e-57 43
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 6e-57 43
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-56 43
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 8e-56 43
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-56 43
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-56 43
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-56 43
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-56 43
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-57 43
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 7e-59 42
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 3e-56 42
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 9e-60 41
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 9e-60 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LFML04_0012 YP_006765226.1 phage integrase family protein VFG1536 Protein 4e-60 43
LFML04_0012 YP_006765226.1 phage integrase family protein VFG0783 Protein 1e-57 43
LFML04_0012 YP_006765226.1 phage integrase family protein VFG0626 Protein 6e-58 43
LFML04_0012 YP_006765226.1 phage integrase family protein VFG1693 Protein 2e-57 43
LFML04_0012 YP_006765226.1 phage integrase family protein VFG0598 Protein 3e-57 43