Gene Information

Name : rlmH (A964_2020)
Accession : YP_006765211.1
Strain : Streptococcus agalactiae GD201008-001
Genome accession: NC_018646
Putative virulence/resistance : Unknown
Product : rRNA large subunit methyltransferase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2060224 - 2060703 bp
Length : 480 bp
Strand : -
Note : -

DNA sequence :
ATGAAATTAAAAATAATTACAGTTGGAAAATTGAAAGAGAAATACCTTAAAGAAGGTGTTGCAGAGTATCAGAAACGTCT
GAATCGCTTTTCTAAAATTGAGACAATTGAGCTAGCTGATGAAAAGACACCTGATAAAGCTAGTATATCTGAAAATCAAA
GAATTTTAGATATAGAAGGGGAACGTATTTTGAGTAAAATAGGTGAGAGGGATTATGTCATTGGTTTGGCTATAGAAGGG
AAACAATTGCCATCTGAATCATTTAGCCATCTAATCGATCAAAAAATGATATCCGGCTACTCTACTATTACTTTTGTTAT
TGGTGGTAGTTTGGGTTTATCTCAAAAAGTGAAAAAACGTGCTGATTATTTAATGAGTTTTGGACTGTTAACCTTACCTC
ATCAACTTATGAAATTAGTCTTGATGGAACAAATTTATCGTGCTTTTATGATTCGTCAAGGCACTCCTTACCACAAATAA

Protein sequence :
MKLKIITVGKLKEKYLKEGVAEYQKRLNRFSKIETIELADEKTPDKASISENQRILDIEGERILSKIGERDYVIGLAIEG
KQLPSESFSHLIDQKMISGYSTITFVIGGSLGLSQKVKKRADYLMSFGLLTLPHQLMKLVLMEQIYRAFMIRQGTPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 4e-36 51
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 8e-38 51
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 8e-38 51
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 4e-39 50
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 4e-39 50
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 4e-39 50
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 1e-38 50
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 4e-39 50
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 4e-39 50
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 4e-39 50
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 4e-39 50
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 3e-38 50
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 4e-39 50
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 3e-38 50
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 4e-39 50
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 5e-39 50
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 4e-39 50
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 5e-39 50
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 4e-24 50