Gene Information

Name : HIMB59_00005560 (HIMB59_00005560)
Accession : YP_006757933.1
Strain : alpha proteobacterium HIMB59 HIMB59
Genome accession: NC_018644
Putative virulence/resistance : Resistance
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 514419 - 514691 bp
Length : 273 bp
Strand : -
Note : PFAM: Uncharacterised BCR, COG1937

DNA sequence : 
ATGTCAAGAAACCCAGATCATACTAAAAATATCAACCGTATACATCGCATTCAAGGCCAGCTTCGTGGAGTAGAAAAAAT
GATCGAAGAGAAAAAATATTGTATGGATATTCTCCAACAAACCCGAGCCATCACCTCAGCTATTAAATCCCTAGAAGACA
ATATATTAGAAAAACATATCAATAGCTGTGTAATTACAGCGGTTAACACTTCATCTCAAAAAAATAAAAAAATAAAAGAA
ATTACGGATTTGTTTAAAAAAATTAATTCCTAA

Protein sequence : 
MSRNPDHTKNINRIHRIQGQLRGVEKMIEEKKYCMDILQQTRAITSAIKSLEDNILEKHINSCVITAVNTSSQKNKKIKE
ITDLFKKINS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SERP2514 YP_190056.1 hypothetical protein Not tested Type-II SCCmec Protein 3e-08 44
unnamed BAC57484.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 2e-08 44
unnamed BAA82210.2 - Not tested Type-II SCCmec Protein 2e-08 44
SAV0048 NP_370572.1 hypothetical protein Not tested Type-II SCCmec Protein 3e-08 44
SA0045 NP_373285.1 hypothetical protein Not tested Type-II SCCmec Protein 3e-08 44
SAR0047 YP_039520.1 hypothetical protein Not tested Type-II SCCmec Protein 3e-08 44
unnamed BAB47614.1 hypothetical protein Not tested Type-III SCCmec Protein 2e-08 44
unnamed BAA94324.1 hypothetical protein Not tested Type-I SCCmec Protein 3e-09 43
unnamed BAB83476.1 - Not tested SCC 12263 Protein 6e-09 42
SACOL0048 YP_184958.1 hypothetical protein Not tested Type-I SCCmec Protein 4e-09 42
SAPIG0063 YP_005732873.1 conserved protein YrkD Not tested Type-V SCCmec Protein 6e-09 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HIMB59_00005560 YP_006757933.1 hypothetical protein BAC0558 Protein 2e-13 42