|
Name : HIMB59_00011190 (HIMB59_00011190) Accession : YP_006758479.1 Strain : alpha proteobacterium HIMB59 HIMB59 Genome accession: NC_018644 Putative virulence/resistance : Virulence Product : TRAP transporter subunit DctM Function : - COG functional category : - COG ID : - EC number : - Position : 1018019 - 1019314 bp Length : 1296 bp Strand : + Note : PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit DNA sequence : ATGACTCTCGAGCTTACTCTATGTTTACTTACTCTTTTTGGACTGGCCGGCATAGGCACTCCGGTTGGCTATTCTATCAT GATGTCTTCTATAATTTATTTTGCAGTAGGGGGATTTGATGTTGCTTTAACTGGAGAAAAAATTCTACAAGGCTTGTACA AATCTTTTGTTTTATTGGCCGTACCTTTATTCATAGCTGCTGCAAATATTATGAATGGTGGAACAATAACTGATCGCTTA CTAAAATTTTGCATAGCAGTTGTTGGTCGTTTTAAAGGTGGTTTAGGGCATGTTAATGTCGTGGCTTCACTTATTTTTTC TGGAATGTCAGGTTCGGCGGTCGCTGATGCTGCAGGAATAGGAAAAATCATTATAGGCATGATGACTAAAAGTGGGAGAT ACACTAAAGGGTATGCGGCCGCAATTACTGCTGCTTCAGCCACTATCGGTCCAATTATACCTCCTTCAATACCAATGGTT CTTTATTCAGTTGTATCAGACAGCTCAATAGGTTTTTTATTTCTTGCAGGAATAGTTCCAGGTTTGATTATGGGATTATT TTTAATGATATTGAATGGATATATATCCCATAAAAGAAATTTTGCTACTGAAGAACCAGTACCTTTAAGTCAATTACCAA AAACAACTTTTAACGCTTTTCCAGCTTTATTAATGCCAGCAATTTTGCTTTACGGTATTTATGGAGGTGTTACTACACCA ACTGAAGCTGCAGCTATAGCTGCTTTATACGCTTTAATTTTAGCTGCTGGTCTTTATAGAGCTTTAACTTTTAATTCTCT TTATGAAATTCTAGTTGAAAGTGCTCGTTCTTCAGCTGCTGTTGGAGTAGTAATTGGTGGTGCGTTTATTCTGAACTATA TCGTAATAGCAGAGAATATTCCGAGTTTTATGTCCACAATATTAACAGGAATAGATATGCACCCTTTATTATTTTTATTA CTTATTAACATCTTTGTGCTTGTTCTAGGTTGTTTTTTAGATGCTACGACAATAATTTTAGTAATTGTTCCTTTATTTAT TCCTGCTTGCAAAGCATTAGGAATAGATTTAGTTCATTTTGGAGTTTTGGTTGTCGTTAACTCAATGATTGGTTTAATAA CACCTCCTTACGGCATCCTTCTTTTTGTTATTAATGCTGTTACAGGAATACCAATCAAAGAAATAATCTCTGAAATATGG ATATTTTTTATCACTTTAATAGCCGCTCTTATAACTCTTATAATTTTTCCTGATATGGTCCTTTGGCTTCCAAGATTGAT GGGCTATTCAGGATAA Protein sequence : MTLELTLCLLTLFGLAGIGTPVGYSIMMSSIIYFAVGGFDVALTGEKILQGLYKSFVLLAVPLFIAAANIMNGGTITDRL LKFCIAVVGRFKGGLGHVNVVASLIFSGMSGSAVADAAGIGKIIIGMMTKSGRYTKGYAAAITAASATIGPIIPPSIPMV LYSVVSDSSIGFLFLAGIVPGLIMGLFLMILNGYISHKRNFATEEPVPLSQLPKTTFNAFPALLMPAILLYGIYGGVTTP TEAAAIAALYALILAAGLYRALTFNSLYEILVESARSSAAVGVVIGGAFILNYIVIAENIPSFMSTILTGIDMHPLLFLL LINIFVLVLGCFLDATTIILVIVPLFIPACKALGIDLVHFGVLVVVNSMIGLITPPYGILLFVINAVTGIPIKEIISEIW IFFITLIAALITLIIFPDMVLWLPRLMGYSG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC1777 | NP_231412.1 | hypothetical protein | Not tested | VPI-2 | Protein | 3e-34 | 42 |
| VC0395_A1375 | YP_001217318.1 | hypothetical protein | Not tested | VPI-2 | Protein | 3e-34 | 42 |
| VPI2_0025c | ACA01842.1 | TRAP dicarboxylate transporter DctM subunit | Not tested | VPI-2 | Protein | 2e-34 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HIMB59_00011190 | YP_006758479.1 | TRAP transporter subunit DctM | VFG1110 | Protein | 1e-34 | 42 |
