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Name : HIMB5_00006350 (HIMB5_00006350) Accession : YP_006756574.1 Strain : alpha proteobacterium HIMB5 HIMB5 Genome accession: NC_018643 Putative virulence/resistance : Unknown Product : serine--tRNA ligase Function : - COG functional category : - COG ID : - EC number : 6.1.1.11 Position : 579560 - 580819 bp Length : 1260 bp Strand : + Note : PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase DNA sequence : ATGCATAACATTAAAGATATTAGAAAAGACTTAAAATCTTTTGAGGAACATTTAAAAAAAAGATTTGTGAATGTTGATAT TGATGAAATTAAAAAACTTGATGAAAATAATAGAGAATTAATACAGAAAAAAGAAACTTTAGAACAAGAAAAAAAAGAAA TTTCAAAATCAAAAGATCAAAATTTATTCAAAAGATCTAAAGAAATATCATCAGAAATTGATAACTATTCAAAGGAGCAA ACTGAAATTAAAAATAGATTAGAGAACATTTTATCTTCTATTCCAAATATTCCACATTCAGACGTGCCGATAGGAAAAGA TGAAAATGAAAATTTAGAAGTTTCAAAATCCGGTAAAATACCGGAATTTGATTTTAAACCAAAATCTCATTTTGATTTAG GTGAAAAATTAGGAATGTTAGATTTTGATTTAGCTACCAAAACAACTGGTGCTAGATTTGTTTTTGTTAAAGATAAGTTA GCATTAATGGAAAGAGCAATTACTAACTTTATGTTAGATACCCATATACATAGAAATTCTTATAAAGAAATATCTCCTCC TTTAATGGCATCAGCTAATACAATGTATGGTACTGGTCAATTACCTAAATTTGAAAATGACCAGTTTGAATTAAAAATGG AAGAGGGTTCAGATAGAAAGTTTTTAATTCCAACAGCTGAAGTTATTTTAACTAATATAGTTAAAAACCAAATTGTTGAT AAAGCAAATTTGCCAATGAGATTAGTAGCCGCTACACCATGTTTTCGTAAAGAAGCTGGTAGTTACGGTAAAGATACAAA AGGAATGATAAGACAGCACCAATTTTACAAAGTTGAGATGGTAAGTATTGTTGAAAATCAAAATTGCTTAGAAGAACTAG AACGTATGACTAATTGCGCAACTGATATTTTAGATCAATTAGAACTACCATACAGAAAAGTTATTCTATGCACAGGAGAT ATGGGTTTTAGTGCAGAAAAAACTTATGACATTGAAGTTTGGTTACCGTCAGAAAATAAATATAGAGAAATTTCATCTTG TTCATCATGCTCAACATTTCAAGCTAATCGAATGAAATCTAGATATAAAAATGATAATAAAGAAACTCTATTTGTTGGTA CTTTAAACGGCAGTGGCTTAGCAGTTGGTAGAACTATGATAGCAATTATGGAAAATTACCAACAAAAAGATGGTTCAATA GAAATTCCTAAAGTCCTAAGACCCTATATGAACAATATGGACAAAATAACTTCCAATTAA Protein sequence : MHNIKDIRKDLKSFEEHLKKRFVNVDIDEIKKLDENNRELIQKKETLEQEKKEISKSKDQNLFKRSKEISSEIDNYSKEQ TEIKNRLENILSSIPNIPHSDVPIGKDENENLEVSKSGKIPEFDFKPKSHFDLGEKLGMLDFDLATKTTGARFVFVKDKL ALMERAITNFMLDTHIHRNSYKEISPPLMASANTMYGTGQLPKFENDQFELKMEEGSDRKFLIPTAEVILTNIVKNQIVD KANLPMRLVAATPCFRKEAGSYGKDTKGMIRQHQFYKVEMVSIVENQNCLEELERMTNCATDILDQLELPYRKVILCTGD MGFSAEKTYDIEVWLPSENKYREISSCSSCSTFQANRMKSRYKNDNKETLFVGTLNGSGLAVGRTMIAIMENYQQKDGSI EIPKVLRPYMNNMDKITSN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-89 | 49 |
