Gene Information

Name : ykoG (BN194_28170)
Accession : YP_006752883.1
Strain : Lactobacillus casei W56
Genome accession: NC_018641
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein ykoG
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2829180 - 2829971 bp
Length : 792 bp
Strand : -
Note : Product derived from UniProtKB/Swiss-Prot:O34903;Gene name derived from UniProtKB/Swiss-Prot:O34903

DNA sequence : 
TTGATGGTAGTTTTTGGTTATAGAAAAAGCAGTGTCAATTCTCCTGTACTTGCGCTTATAATTCAAATGACCGCGTTAGG
AGGAAATCAGTTGAAAACAACATTGCTTCTGGTGGAAGATGAAGCGGCTCTGGCGGATTCATTAACAACAGAGTTCGAGT
TAGAGAATATGTCAGTTATTTGGGCAAAAGACGGCGCGGAGGCATTGACGCTGTTTAAGAACAATGAAGGTAAAATCAAT
GTCATTATTTTGGATTGGATGCTGCCTAAACTAGACGGGTTTAGTGTTTTGCGGAAAATCAGACAATCCAGCCAAGTGCC
TATTATTATGTTGACGGCTCGTGATTACATTGGCGACAAGGTGGCTGGACTGACTGGCGGGGCCGATGATTACATCACCA
AGCCTTTTGAAATGGAGGAACTGGTTGCTCGTGTCGAAGTCGCCTTGCGTCACAATCGGCAGGCTGTCTCACCAGCGACT
ATTTTTCAAGTCGATGATCTGCTGGTGGATACGGATAACAAACGCGTTCAGCGCGGTGAGGTGATTATGCCATTGACACA
GCGGGAATATGAGTTGCTTGTCGAACTTGTTGCCCATCAGGACGAAGCTTGTTCGAGGGATGACTTGCTTGCTGCCGTCT
GGGGAACCGATTTTGACGGTCAGCCTAATATATTGGATGTCTATATCAGAAATTTACGTCATAAAATTGATGATCATTCA
GGTAGCAAGAAACTCATTCATACTGTTCGCGGCGTCGGCTATATGCTCTCGGCTAATGTTGCATCCATTTAG

Protein sequence : 
MMVVFGYRKSSVNSPVLALIIQMTALGGNQLKTTLLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKIN
VIILDWMLPKLDGFSVLRKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQAVSPAT
IFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLAAVWGTDFDGQPNILDVYIRNLRHKIDDHS
GSKKLIHTVRGVGYMLSANVASI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-31 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-30 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ykoG YP_006752883.1 transcriptional regulatory protein ykoG BAC0308 Protein 4e-28 43
ykoG YP_006752883.1 transcriptional regulatory protein ykoG BAC0197 Protein 2e-31 42
ykoG YP_006752883.1 transcriptional regulatory protein ykoG BAC0125 Protein 3e-31 42
ykoG YP_006752883.1 transcriptional regulatory protein ykoG NC_012469.1.7685629. Protein 1e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ykoG YP_006752883.1 transcriptional regulatory protein ykoG VFG0596 Protein 2e-31 43
ykoG YP_006752883.1 transcriptional regulatory protein ykoG VFG1389 Protein 9e-34 43
ykoG YP_006752883.1 transcriptional regulatory protein ykoG VFG1390 Protein 5e-34 41