Gene Information

Name : arlR (BN194_18650)
Accession : YP_006751931.1
Strain : Lactobacillus casei W56
Genome accession: NC_018641
Putative virulence/resistance : Virulence
Product : response regulator ArlR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1838085 - 1838807 bp
Length : 723 bp
Strand : -
Note : Product derived from UniProtKB/Swiss-Prot:P0C001;Gene name derived from UniProtKB/Swiss-Prot:P0C001

DNA sequence : 
GTGCGTCAGAGACGAATAAGTATAAGGAGACCATTGATGAGTAAAATATTAATTATTGAAGATGAAAAAAATTTAGCGCG
GTTTGTCGAACTGGAATTAAAACACGAGGGCTATGAGACCGAAGTGCATTTTAACGGTCGAACCGGGTTGGAAGCGGCTT
TGGCAGAGGACTGGGATGCCATCTTGCTTGACTTGATGTTGCCAGAATTAAACGGCCTTGAAGTTTGCCGGCGCGTTCGT
CAGGTGAAGAATACACCGATCATTATGATGACCGCGCGGGATTCTGTCATTGATCGCGTCAGTGGCTTGGATCATGGCGC
TGATGACTACATTGTGAAGCCATTTGCCATTGAAGAATTACTCGCGCGCTTGCGTGCTTTGTTGCGCCGAATCAGTATTG
AAGGCGAAAACAACACCGCTAAGCAGACAACCATCAAATATCGTGATTTAGTGATTGAAAAAGAAAATCGCGTTGTTCGG
CGCGGCGACGACATTATTGAATTAACCAAACGTGAGTACGAATTATTGCTGACGCTTATGGAAAATGTCAACGTTGTTTT
GGCTCGTGACGTTTTGCTCTCAAAGGTTTGGGGTTACAACTCTGACGTGGAAACGAATGTTGTTGACGTCTATGTCCGTT
ATATTCGTAATAAAATCGATCGACCGGGTGAGCCGAGTTATATTCAAACGGTTCGGGGAACCGGCTATGTTATGCGTTCG
TAA

Protein sequence : 
MRQRRISIRRPLMSKILIIEDEKNLARFVELELKHEGYETEVHFNGRTGLEAALAEDWDAILLDLMLPELNGLEVCRRVR
QVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRISIEGENNTAKQTTIKYRDLVIEKENRVVR
RGDDIIELTKREYELLLTLMENVNVVLARDVLLSKVWGYNSDVETNVVDVYVRYIRNKIDRPGEPSYIQTVRGTGYVMRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-27 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-28 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
arlR YP_006751931.1 response regulator ArlR HE999704.1.gene1528. Protein 3e-79 78
arlR YP_006751931.1 response regulator ArlR NC_002951.3238224.p0 Protein 2e-47 53
arlR YP_006751931.1 response regulator ArlR NC_007793.3914065.p0 Protein 2e-47 53
arlR YP_006751931.1 response regulator ArlR NC_002758.1121390.p0 Protein 2e-47 53
arlR YP_006751931.1 response regulator ArlR NC_010079.5776364.p0 Protein 2e-47 53
arlR YP_006751931.1 response regulator ArlR NC_002952.2859858.p0 Protein 2e-47 53
arlR YP_006751931.1 response regulator ArlR NC_007622.3794948.p0 Protein 2e-47 53
arlR YP_006751931.1 response regulator ArlR NC_003923.1003417.p0 Protein 2e-47 53
arlR YP_006751931.1 response regulator ArlR NC_013450.8614146.p0 Protein 2e-47 53
arlR YP_006751931.1 response regulator ArlR AE015929.1.gene1106. Protein 2e-43 52
arlR YP_006751931.1 response regulator ArlR NC_012469.1.7685629. Protein 2e-38 44
arlR YP_006751931.1 response regulator ArlR BAC0308 Protein 1e-30 43
arlR YP_006751931.1 response regulator ArlR BAC0125 Protein 3e-29 43
arlR YP_006751931.1 response regulator ArlR BAC0197 Protein 3e-28 42
arlR YP_006751931.1 response regulator ArlR BAC0638 Protein 3e-25 42
arlR YP_006751931.1 response regulator ArlR HE999704.1.gene2815. Protein 3e-32 42
arlR YP_006751931.1 response regulator ArlR BAC0083 Protein 5e-28 41
arlR YP_006751931.1 response regulator ArlR BAC0111 Protein 3e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
arlR YP_006751931.1 response regulator ArlR VFG1390 Protein 6e-37 44
arlR YP_006751931.1 response regulator ArlR VFG0596 Protein 5e-28 43
arlR YP_006751931.1 response regulator ArlR VFG1389 Protein 2e-31 42
arlR YP_006751931.1 response regulator ArlR VFG1702 Protein 8e-30 41