Gene Information

Name : fliP (MASE_04890)
Accession : YP_006747081.1
Strain : Alteromonas macleodii ATCC 27126
Genome accession: NC_018632
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1143554 - 1144309 bp
Length : 756 bp
Strand : +
Note : COG1338 Flagellar biosynthesis pathway, component FliP

DNA sequence : 
ATGCGTAAGTTTGCCTGGCTACTTTTAATACTGCCCTTATTACTTCTCGTTGAGCCCGCCTATGCTCAACAGGGGATTTC
TGCAGTCACGGTGACAACCAATCAAGATGGTTCTCAAGACTACACCATGACGCTTCAAGCGCTGTTTATCATGACGGCGC
TAAGCCTTATTCCTGCGTTTATCATGATGATGACCTCTTTCACGCGTATTATTGTGGTGTTGTCTATTTTGCGTCAGGCG
ATTGGCTTACAGCAATCACCGTCAAACCAGATACTCATTGGCGTTAGTTTGTTTCTATCCATGTTTATTATGGCGCCGGT
GTTTGAAGAGGTGAACGAGCGAGCTTTACAGCCTTACCTTAACGAGCAACTCACCAGTTTAGACGCTTTGGAGCAAGCCA
AAGGCCCTATGCGCGCATTCATGCTTTCACAAACAAGGGTAAAAGACTTAGAAACGTTTGTACGGATAGCCGGAGACGAA
GGAAAATACGCTGACACCAATGAAGTACCGCTGACCATCCTTATTCCGGCTTTTGTAACCAGTGAACTTAAAACCGCGTT
TCAAATTGGTTTTATGCTATTTATTCCCTTTCTTATTATTGACTTGGTGGTAGCGTCTATATTGATGGCTATGGGTATGA
TGATGCTTTCACCTATGATTGTATCCTTGCCGTTTAAACTCATGTTGTTCGTGTTGGTTGATGGTTGGAACCTGATTTTC
GGTACATTGGCGACCAGCTTCGGTATGGGCGTCTAG

Protein sequence : 
MRKFAWLLLILPLLLLVEPAYAQQGISAVTVTTNQDGSQDYTMTLQALFIMTALSLIPAFIMMMTSFTRIIVVLSILRQA
IGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETFVRIAGDE
GKYADTNEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIF
GTLATSFGMGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-26 44
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 6e-28 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-24 43
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-24 43
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-24 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 7e-27 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-27 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 4e-24 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 4e-24 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-24 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-23 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-23 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-28 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-28 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-28 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-28 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-28 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-27 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-24 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-24 42
escR AAC38369.1 EscR Virulence LEE Protein 6e-25 42
escR AAK26700.1 EscR Virulence LEE Protein 8e-26 42
escR AAL57527.1 EscR Virulence LEE Protein 8e-26 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-25 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 8e-26 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-25 42
escR CAI43889.1 EscR protein Virulence LEE Protein 8e-26 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-25 42
escR AAC31528.1 L0049 Virulence LEE Protein 8e-26 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-25 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 8e-26 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-25 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 6e-17 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 6e-17 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-17 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-17 41
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_006747081.1 flagellar biosynthesis protein FliP VFG1259 Protein 6e-68 69
fliP YP_006747081.1 flagellar biosynthesis protein FliP VFG2016 Protein 4e-57 60
fliP YP_006747081.1 flagellar biosynthesis protein FliP VFG2494 Protein 4e-51 53
fliP YP_006747081.1 flagellar biosynthesis protein FliP VFG2338 Protein 2e-47 52
fliP YP_006747081.1 flagellar biosynthesis protein FliP VFG0044 Protein 6e-27 44
fliP YP_006747081.1 flagellar biosynthesis protein FliP VFG0394 Protein 3e-24 43
fliP YP_006747081.1 flagellar biosynthesis protein FliP VFG0519 Protein 2e-24 42
fliP YP_006747081.1 flagellar biosynthesis protein FliP VFG0827 Protein 5e-26 42
fliP YP_006747081.1 flagellar biosynthesis protein FliP VFG0715 Protein 4e-25 42
fliP YP_006747081.1 flagellar biosynthesis protein FliP VFG0188 Protein 6e-25 41