Gene Information

Name : HMPREF1038_01830 (HMPREF1038_01830)
Accession : YP_006743974.1
Strain : Streptococcus pneumoniae gamPNI0373
Genome accession: NC_018630
Putative virulence/resistance : Resistance
Product : glycine betaine/L-proline ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1684674 - 1685402 bp
Length : 729 bp
Strand : -
Note : KEGG: san:gbs2088 8.6e-71 similar to osmoprotectant ABC transporter (ATP-binding protein) K02000; Psort location: CytoplasmicMembrane, score: 9.82

DNA sequence : 
ATGATTGAATACAAAAATGTAGCACTGCGCTACACAGAAAAGGATGTCTTGAGAGATGTCAACTTACAGATTGAAGATGG
GGAATTTATGGTTTTAGTAGGGCCTTCTGGATCAGGTAAGACGACCATGCTCAAGATGATTAACCGTCTTTTGGAACCAA
CTGATGGAAATATTTATATGGATGGGAAGCGCATCAAAGACTATGATGAGCGTGAACTTCGTCTTTCTACTGGTTATGTT
TTACAGGCTATTGCTCTTTTTCCAAATCTAACAGTTGCGGAAAATATTGCTCTCATTCCTGAAATGAAGGGGTGGAGCAA
GGAAGAAATTACGAAGAAAACAGAAGAGCTTTTGGCTAAGGTTGGTTTACCAGTAGCCGAGTATGGGCATCGCTTACCTA
GTGAATTATCTGGTGGAGAACAGCAACGGGTCGGTATTGTCCGAGCTATGATTGGTCAGCCCAAGATTTTCCTCATGGAT
GAACCCTTTTCGGCCTTGGATGCTATTTCGAGAAAACAGTTGCAGGTTCTGACAAAAGAATTGCATAAAGAGTTTGGGAT
GACAACGATTTTTGTAACCCATGATACGGATGAAGCCTTGAAGTTGGCGGACCGTATTGCTGTCTTGCAGGATGGAGAAA
TTCGCCAGGTAGCGAATCCCGAGACAATTTTAAAAGCGCCTGCAACAGACTTTGTAGCAGACTTGTTTGGAGGTAGTGTT
CATGACTAA

Protein sequence : 
MIEYKNVALRYTEKDVLRDVNLQIEDGEFMVLVGPSGSGKTTMLKMINRLLEPTDGNIYMDGKRIKDYDERELRLSTGYV
LQAIALFPNLTVAENIALIPEMKGWSKEEITKKTEELLAKVGLPVAEYGHRLPSELSGGEQQRVGIVRAMIGQPKIFLMD
EPFSALDAISRKQLQVLTKELHKEFGMTTIFVTHDTDEALKLADRIAVLQDGEIRQVANPETILKAPATDFVADLFGGSV
HD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 3e-40 46
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 7e-41 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF1038_01830 YP_006743974.1 glycine betaine/L-proline ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 1e-24 41