Gene Information

Name : LBUCD034_1866 (LBUCD034_1866)
Accession : YP_006726439.1
Strain : Lactobacillus buchneri CD034
Genome accession: NC_018610
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1828639 - 1829334 bp
Length : 696 bp
Strand : +
Note : -

DNA sequence : 
ATGACGAATACTATCCTGCTGGTTGAAGACGAGGAAGCACTCAGCTCGTATTTAATCCCGGAATTAAAATTTGAAGATTA
TCAGGTATTGTTGGCAAAAGACGGTCAAGAAGCCCTCCAAGTCTATGACAATAACCGGGGCAACTTAGATCTGATCATCC
TGGATTGGATGCTGCCAAAGCTTGACGGACTGGAAGTTCTACGGCGAATCCGCAAAAATGATGACATCCCAGTTATCATG
ATGACCGCCAGAGATTACGTCGGCGATAAAGTCGCCGGACTCGACAGCGGTGCCGATGATTACATTACCAAACCATTTGA
AATTGAAGAACTGCTGGCCCGAATTCGAGTCGTTCTCCGCCACGAGAGCCATCACCACCAGCAAAGCGAACTTTATACCG
TAGAGGACCTGACCTTAAACACCAAGTCCCGCCAGGTTTCGCGGGGAAATCAACTGATTCAACTCACCCAACGGGAGTAC
GAATTGTTATTAACCCTCATTCGCCACGGTGGCGAAACCCTCACCCGTGATGAGCTGCTTGACGCAGTTTGGGGGGTCGA
TTTCGAAGGCCAGCCAAATGTCGTTGACGTTTATATCCGCTACTTGCGCAATAAAGTTGATCGGGGATATTCCAAACAGC
TGATCCACACCGTCCGTGGAGTCGGCTATGTGATGTCCGGAAATTATCAGGAATAA

Protein sequence : 
MTNTILLVEDEEALSSYLIPELKFEDYQVLLAKDGQEALQVYDNNRGNLDLIILDWMLPKLDGLEVLRRIRKNDDIPVIM
MTARDYVGDKVAGLDSGADDYITKPFEIEELLARIRVVLRHESHHHQQSELYTVEDLTLNTKSRQVSRGNQLIQLTQREY
ELLLTLIRHGGETLTRDELLDAVWGVDFEGQPNVVDVYIRYLRNKVDRGYSKQLIHTVRGVGYVMSGNYQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-37 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-36 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator HE999704.1.gene1528. Protein 2e-41 49
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 1e-41 47
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 1e-41 47
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 1e-41 47
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 1e-41 47
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 1e-41 47
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 1e-41 47
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 1e-41 47
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 1e-41 47
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator AE015929.1.gene1106. Protein 9e-37 45
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator BAC0125 Protein 2e-40 44
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator BAC0308 Protein 6e-39 44
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator BAC0197 Protein 7e-40 43
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator NC_012469.1.7686381. Protein 6e-33 41
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator NC_002952.2859905.p0 Protein 3e-35 41
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator NC_007622.3794472.p0 Protein 3e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator VFG1390 Protein 6e-45 47
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator VFG1389 Protein 1e-38 43
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator VFG0596 Protein 8e-38 42
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator VFG1386 Protein 3e-39 42
LBUCD034_1866 YP_006726439.1 DNA-binding response regulator VFG0473 Protein 5e-27 41