|
Name : clpC (LBUCD034_1808) Accession : YP_006726393.1 Strain : Lactobacillus buchneri CD034 Genome accession: NC_018610 Putative virulence/resistance : Virulence Product : ATPase/chaperone ClpC Function : - COG functional category : - COG ID : - EC number : - Position : 1783789 - 1786281 bp Length : 2493 bp Strand : - Note : - DNA sequence : ATGAATAATTTATTTACTCCGAGTGCTAAGAACGTTTTGACCATTGCACAAGAACAAGCCAAGAAATTCAAGCACCAAGC AATTGGAACTGAACATCTTCTATTAGGCTTACTGATCGAAACGAATGGAATTGCCTACAAGGCGCTTCAGCAGTTTTCAG TAACTGCCGAAGATGTCACTGAAGAAGTAGAGCGTTTCGCCGGCTATGGCAACCTTAAGGACCTTAGCAGTAACGATTAT CTACCATACTCTCCAAAGGCAAAGGAAGTTTTGGCTCAAGCAGGAGAATTCGCCAAGAAGAACGGTGTTCCAAAGGTTGG AACCGAGCACATTTTGCTTTCACTTCTGACTGATGAGACCATTTTATCTTCCCGTATTCTGATTAACTTGGGACTCGATC TATCACAAATTAGAAAAGTAACCCTTCGAAAAATGGGCATCAGTGGTGGCTCAATGGCCTCAAACCTGGCTTCCAAACAA CGTGGCCGTCAACAAAAGCCAGCTGACTCAAAGACACCAACAATTGATTCATTGGCTCGTGACCTCACTGAAATGGCCCG TCAAGACCGTCTTGACCCAACCGTCGGCAGGGATCTCGAAGTTAAACGTGTGGTTCAAATTTTAGCTCGTCGGACGAAGA ACAACCCTGTTTTAATTGGCGAACCCGGTGTTGGAAAAACCGCCATCGCTGAAGGCTTGGCAGAACGGATTGTCAGCGGC GACGTTCCTGGTGACATGTCCAAGAAGCGTCTGATGATGCTTGACATGGGCTCACTGGTTGCCGGTACCAAATACCGTGG TGAATTTGAAGACCGACTCAAGAAAGTGATTGATGAAATTTACCAAGATGGCAACATTATTCTGTTCATCGATGAATTAC ACACTTTGATCGGTGCCGGTGGTGCAGAAGGTGCGATTGACGCTTCCAACATTTTGAAGCCGGCATTGGCCCGGGGTGAA CTCCAATTAATTGGTGCCACAACTTTGGACGAGTACCAAAAGTACATTGAATCCGATGCTGCATTGGAGCGTCGATTTGC CAAAGTTATGGTTGATGAGCCAACGACTGATGAAACGGTGGAAATTCTCAAAGGCTTACGGCCAAAATACGAGCAACATC ACCACGTTGAAATTACTGATGACGCCATTGAAACTGCAGTTAACCTTTCCAACCGCTACATCAGCGACCGATTCTTACCT GATAAGGCGATCGATTTAATGGATGAGGCAGCTGCCAAAGTTCGAATTGATCACCTTCAAAAATCTGATGCCGTTGATGA TCATAAGAAACTCTCAGATTTGTTATCAGAATTAAATGAAGCCTTGGTAGCCCAGGATTACGAAAAAGCTGCTAAGATTC GCAAACAAACCAATCAGTTACAGGATGAACTTGCTCAAGATAATGATTCCGAGGAAGGCTCAGAGGATGCACATTACCCC GTCAAAGAGACGCCACAAGACGTTGCTGAAATCGTGGGCGAGTGGACTGGGATTCCGGTTACTCGTTTGAGCAGTACCGA AGCTGACCGCTTAGTCAACTTGGAAAAGATTCTTCACAAGCGGGTTGTTGGTCAGGAAGAGGCAATTTCAGCGGTTTCTC GTTCAATTCGTCGGGCTCGAAGCGGTTTGAAAGATCCGAACCGTCCAATTGGTTCCTTCATGTTCCTAGGGCCGACCGGT GTTGGTAAAACCGAGTTGGCAAAGGCAGTTGCCGAGGCAGTCTTTGGTTCTGAAGAAGACATGATTCGAGTTGACATGAG TGAATTTATGGAGAAATATTCAACCAGTCGTCTGATTGGTTCTGCTCCCGGCTACGTTGGCTACGATGAAGGTGGTCAGT TAACCGAAAAGGTTCGTCAAAAGCCATACTCAGTTGTGCTTTTTGATGAAGTTGAAAAGGCTCATCCAGATGTCTTCAAC CTCTTACTTCAAGTTCTTGATGATGGTTACTTGACGGATGCCAAGGGTCGAAAGATTGATTTCAGAAACACGGTTATCAT CATGACTTCCAACCTGGGTGCAACCACATTGCGGGATAAGAAGACCGTTGGATTTGGTCAAGAGGATGCCAAGGAAGGCT ATGCAGCAATGAAGGACACGATTCAAGCTGCCCTCAAGCAACGCTTCCGTCCTGAATTCCTGAACCGAATTGATGAAGTG GTTGTCTTCCACTCATTGACCAAGGACGAACTTGATCAAATTGTTTACCTGATGGCCAAACCGGTTATCAAGCGGATTCA CGATCAAGGCATTGACATTAAGATTACCAAGACTGCAATCGGGATTATTTCCAAGCGTGGTTTTGACCCTGAGTACGGTG CTCGTCCAATCAGAAGAGCAATTCAAACTGAACTCGAGGATAATTTGAGTGCCAAGTTGCTTGCCAAGGAAATTGTCCCC GGCGACTCAGTCACTGTTGGCGGTAGAAACAACCAGATTACCATTTCAGTGAAGAAGCCGGAACGCAAAACTTTAGTGAA TGATAAAAAATAA Protein sequence : MNNLFTPSAKNVLTIAQEQAKKFKHQAIGTEHLLLGLLIETNGIAYKALQQFSVTAEDVTEEVERFAGYGNLKDLSSNDY LPYSPKAKEVLAQAGEFAKKNGVPKVGTEHILLSLLTDETILSSRILINLGLDLSQIRKVTLRKMGISGGSMASNLASKQ RGRQQKPADSKTPTIDSLARDLTEMARQDRLDPTVGRDLEVKRVVQILARRTKNNPVLIGEPGVGKTAIAEGLAERIVSG DVPGDMSKKRLMMLDMGSLVAGTKYRGEFEDRLKKVIDEIYQDGNIILFIDELHTLIGAGGAEGAIDASNILKPALARGE LQLIGATTLDEYQKYIESDAALERRFAKVMVDEPTTDETVEILKGLRPKYEQHHHVEITDDAIETAVNLSNRYISDRFLP DKAIDLMDEAAAKVRIDHLQKSDAVDDHKKLSDLLSELNEALVAQDYEKAAKIRKQTNQLQDELAQDNDSEEGSEDAHYP VKETPQDVAEIVGEWTGIPVTRLSSTEADRLVNLEKILHKRVVGQEEAISAVSRSIRRARSGLKDPNRPIGSFMFLGPTG VGKTELAKAVAEAVFGSEEDMIRVDMSEFMEKYSTSRLIGSAPGYVGYDEGGQLTEKVRQKPYSVVLFDEVEKAHPDVFN LLLQVLDDGYLTDAKGRKIDFRNTVIIMTSNLGATTLRDKKTVGFGQEDAKEGYAAMKDTIQAALKQRFRPEFLNRIDEV VVFHSLTKDELDQIVYLMAKPVIKRIHDQGIDIKITKTAIGIISKRGFDPEYGARPIRRAIQTELEDNLSAKLLAKEIVP GDSVTVGGRNNQITISVKKPERKTLVNDKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_006726393.1 | ATPase/chaperone ClpC | VFG0079 | Protein | 0.0 | 57 |
| clpC | YP_006726393.1 | ATPase/chaperone ClpC | VFG0080 | Protein | 8e-148 | 52 |
