Gene Information

Name : LBUCD034_0140 (LBUCD034_0140)
Accession : YP_006724832.1
Strain : Lactobacillus buchneri CD034
Genome accession: NC_018610
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 164084 - 164785 bp
Length : 702 bp
Strand : -
Note : -

DNA sequence : 
ATGGCATATATCGACGTCAAACACGTATCCAAAATTTACGGCAGCGGCGAGCAGGAAGTCCGCGCCAACGACGACATTAA
TTTTGAAATTAAAAAGGGCGAACTCACAATTATTGTCGGCGCCTCGGGAGCGGGGAAATCCACGCTGCTCAACATTTTAG
GCGGAATGGATACGCCCACTAAAGGAGACGTAATCGTCAACGATCGCAATATCGCGACCTATTCGCCAAAACAGCTAACA
ACCTATCGACGGCTATCAGTCGGATTTGTCTTCCAGTTCTACAACCTAATCCCCAACCTCACCGCTTTGGAAAACGTCGA
GTTGGCATCCCAAATTTCACCAGACTCACTGGACGTACCCGAGGTCATGAAAGACGTTGGCCTGGCCAAACGAACCAACA
ATTTCCCGGCCCAACTATCCGGCGGCGAGCAGCAGCGAGTTGCCATTGCCCGGGCGATCGCCAAGAACCCCGAGCTGCTC
CTCTGTGACGAGCCAACTGGGGCACTGGATTATAAAACTGGTAAAAGCATCCTCAAGTTACTCCAAGATTTCAGCCACAA
AACGGACAAGAATGTCATCATCGTTACCCACAATGGCATGATTAAACCAATGGCCGACCACATCATCGAAATTGGTGATG
GCCAGGTTAAGAATGATGAGTTGAATGATTCGCCGGAACCGGTTGAGGAGATTGAGTGGTAG

Protein sequence : 
MAYIDVKHVSKIYGSGEQEVRANDDINFEIKKGELTIIVGASGAGKSTLLNILGGMDTPTKGDVIVNDRNIATYSPKQLT
TYRRLSVGFVFQFYNLIPNLTALENVELASQISPDSLDVPEVMKDVGLAKRTNNFPAQLSGGEQQRVAIARAIAKNPELL
LCDEPTGALDYKTGKSILKLLQDFSHKTDKNVIIVTHNGMIKPMADHIIEIGDGQVKNDELNDSPEPVEEIEW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-36 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-36 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-36 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-36 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LBUCD034_0140 YP_006724832.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7685735. Protein 9e-67 63
LBUCD034_0140 YP_006724832.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 2e-41 43
LBUCD034_0140 YP_006724832.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 2e-36 43
LBUCD034_0140 YP_006724832.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene598.p Protein 1e-40 42