Gene Information

Name : arlR (LBUCD034_1320)
Accession : YP_006725940.1
Strain : Lactobacillus buchneri CD034
Genome accession: NC_018610
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1314366 - 1315052 bp
Length : 687 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTCGAATTTTGATTATTGAAGACGAAAAGAATTTAGCACGTTTCGTCGAACTGGAGTTAAAGCACGAAGGCTACGA
TACCCAAGTTGAGCTAAACGGCCGAACTGGTTTGCAGGCTGCATTGGATGAGAACTTTGATGTCATTTTGCTTGATTTGA
TGTTGCCTGAATTGAACGGAATGGAAGTTGCCCGCCGATTACGTGAAAAGAAGAACACACCGATTATCATGATGACCGCG
CGGGACTCTGTTATTGACCGAGTTTCAGGCTTTGATCATGGTGCTGATGATTACATTGTCAAACCCTTTGCGATTGAGGA
ACTCTTAGCTCGAATCCGGGCCTTGCTTCGCCGAATTCAAATCGAAAATGATCAACAAAAGAACAACAAGAAATCAGTCA
CATTCAAGGACTTGACCATTGAAAAGGAAAGTCGAATTGTTCGTCGTGGCGATGAAGTGATTAACCTCACAAAGCGTGAA
TATGAATTGTTGCTGACTTTGATGGAAAACGTTGACGTTGTCCTGGCCCGGGATGTTCTGCTTACCAAAGTATGGGGGTA
CGATTCCGAAGTTGAGACCAACGTGGTCGATGTTTACATCAGATATCTCCGAAACAAGATTGATCGTCCAGGTGAGAACA
GTTACATTCAAACGGTTAGAGGTACGGGGTACGTGATGCGGTCATGA

Protein sequence : 
MSRILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGMEVARRLREKKNTPIIMMTA
RDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQIENDQQKNNKKSVTFKDLTIEKESRIVRRGDEVINLTKRE
YELLLTLMENVDVVLARDVLLTKVWGYDSEVETNVVDVYIRYLRNKIDRPGENSYIQTVRGTGYVMRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-31 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
arlR YP_006725940.1 two-component response regulator HE999704.1.gene1528. Protein 6e-74 72
arlR YP_006725940.1 two-component response regulator NC_002952.2859858.p0 Protein 1e-47 53
arlR YP_006725940.1 two-component response regulator NC_007622.3794948.p0 Protein 1e-47 53
arlR YP_006725940.1 two-component response regulator NC_003923.1003417.p0 Protein 1e-47 53
arlR YP_006725940.1 two-component response regulator NC_013450.8614146.p0 Protein 1e-47 53
arlR YP_006725940.1 two-component response regulator NC_002951.3238224.p0 Protein 1e-47 53
arlR YP_006725940.1 two-component response regulator NC_007793.3914065.p0 Protein 1e-47 53
arlR YP_006725940.1 two-component response regulator NC_002758.1121390.p0 Protein 1e-47 53
arlR YP_006725940.1 two-component response regulator NC_010079.5776364.p0 Protein 1e-47 53
arlR YP_006725940.1 two-component response regulator AE015929.1.gene1106. Protein 5e-44 52
arlR YP_006725940.1 two-component response regulator BAC0308 Protein 5e-32 42
arlR YP_006725940.1 two-component response regulator BAC0125 Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
arlR YP_006725940.1 two-component response regulator VFG1390 Protein 3e-35 43
arlR YP_006725940.1 two-component response regulator VFG0596 Protein 4e-32 42
arlR YP_006725940.1 two-component response regulator VFG1389 Protein 1e-32 41