|
Name : clpB (B2904_orf1734) Accession : YP_006707813.1 Strain : Brachyspira pilosicoli B2904 Genome accession: NC_018607 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpB Function : - COG functional category : - COG ID : - EC number : - Position : 1791459 - 1794038 bp Length : 2580 bp Strand : + Note : - DNA sequence : ATGGATTATAATAAATATACAATAAAAGCCCAAGAGGCAGTAAATGAAGCTGCTAATATAGCTAATGGTGAAGACCATAA TGAAATAAAAAGCGAGCATTTACTTCTTGCATTATTAAAACAAGAGGACGGACTTATTCAGCCTTTAGTAGAAAGAATAG GCGTTCCTATAAATACGTTAATAGATAAAACTCAAAGATTAGTTGATGAAAATGTAAAGGTTACAGGTGAAAATGTGCAG TTACATTTATCTACTAATGCTGGTAAAGTTTTAGCAAAAGCAGAAAAAGAAGCTAATGCTTTAAAAGACCAATATGTATC AACAGAGCATATATTCTTAGCACTTGTTGAAGCTGACAACAAAGCAGGCGATATGCTTAGAAAAAGCGGAATAAGTAAAA AAGAAGTTTTAAGTGCATTAAAAGATTTAAGAAAAGGTCAAAGTGTAAATAGCCAAGACCCAGAAGCAAAAATGCAGGCA CTTGATAAATACTGCCGTGATTTAACAGCATTAGCAGAAGCAGAAAAAATTGACCCTGTTATAGGACGTGATGAAGAGAT AAGACGTGTTATGCAGGTCTTGTCAAGAAGAACTAAAAATAACCCTGTGCTTATAGGTGAGCCTGGTGTTGGTAAGACTG CTATTGTTGAAGGACTTGCAAGAAGAATAGTTTCTCAAGATGTACCTGAAGGACTTAAAGATAAAAGGCTATTAGCTTTA GATTTAGGTGCATTAGTAGCTGGTGCAAAATTCAGAGGAGAGTTTGAAGAGAGACTAAAAGCTGTTATCACAGAGATAGA AAAATCTGAAGGAAGCATTATATTATTTATAGATGAGCTTCACACACTTGTAGGAGCTGGTGCTACAGAGGGAGCAATGG ACGCTTCTAACCTTTTAAAACCTGCATTAGCAAGAGGCGAATTAAGAGCAATAGGTGCTACTACTTTAGATGAATATAGA AAATATATTGAAAAAGATAAAGCACTTGAGAGAAGATTCCAACAAGTTTATTGTAAAGAGCCTAGTGTTGAAGATACTAT TTCAATATTAAGAGGCTTAAAAGATAAATACGAAGTTCATCATGGTGTAAGAATAAAAGACGATGCATTAGTTGCTGCTG CTGTTTTATCCAACAGGTATATAACTAACAGATTCTTACCAGACAAAGCTATTGACTTGGTAGATGAGGCTGCAAGCCAA TTAAAAATAGAAATAGACAGTCAGCCTACTGAACTTGATAAAATTGAAAGAAAGATTTTACAGCTTAATATAGAAAAGCA AGCTCTTTCAAAAGAAAATGATGCAGCATCTAAAGAGAGATTAGAAAAACTTGAAAAAGAATTATCTGAACTTTCAGAAG AGCGTAATGCTATGAAACTTCAATGGGATAATGAAAAAGGAAGAATTGAAGAGACTAGAAAACTAAAAGAAGAACTTGAA GCTTTAAATATAAAAGAGACTCAATATACAAGAGAAGGCAATTTAGCAAAGGCTGCTGAAATAAAATATGGTAAAATACC AGAATTACAGAAAAAATTAGAAGAAGCTACTAAGGCTATGGAAGAAGCTAAAAACTCTGACAAGAAAGGTCTTTTAAGAG AAGAGATTTCTGAAGATGATATAGCTAGAGTAATATCTGTATGGACTGGAATACCTGTAAGTAAAATGCTTACAAGTGAA AAACAAAAATACTTACAGCTTGAAGAAGTATTACATAAAAGAGTTGTAGGACAAGATGAGGCTATAACTTCAGTTGCTGA TGCCATAAGAAGAAACAGAGCAGGACTTTCTGATGAAAACAAACCGCTTGGAAGTTTCTTATTTATAGGACCTACTGGGG TTGGTAAAACAGAGCTTGCTAAAACACTTGCTGATTTCTTGTTTAGCGATGAAAAAGCTTTAACAAGAATTGATATGAGT GAATATATGGAGAAGTTTTCTGTTACTAGACTTATAGGAGCTCCTCCTGGATATGTAGGTTATGATGAGGGAGGACAATT AACAGAAGCCGTTAGAAGAAGACCTTATTCTGTTATACTATTTGATGAGATAGAAAAAGCTCACCCTGATGTATTTAATG TTTTACTTCAGGTATTAGATGATGGAAGGCTTACTGACGGACAAGGAAGAATAGTAGATTTCAAAAATGCTATTATCATA ATGACAAGTAATTTGGGTTCTGACCTTATTCTTGAAGCTAATGATACTAATGATATCAAAGAAAAAATTCAAGAGTTACT AAAAATATCATTTAGACCAGAGTTCTTAAACAGAATAGATGAGATAATAACATTTACTAGACTTGACAAAAAATACATTG CTGAGATAGTAAGAAATCAAATAGCAAGAGTTGCTAACAGACTTAAAGATAGAAGAATAACTTTAGATGTAAGCGATGAA GCTATAGACTATATTGCTGATATTGGTTATGACCCTCAGTTTGGAGCAAGACCATTAAAAAGAGCAATACAAAACTTTAT AGAAAACCAACTAGCTAAAGAAATGTTAGCGGGCAAATATTTAGAAGGAGATACTATAAAAGTTATTAAATCAGGAGACG GTTTGGTTTTTGAAAAATAA Protein sequence : MDYNKYTIKAQEAVNEAANIANGEDHNEIKSEHLLLALLKQEDGLIQPLVERIGVPINTLIDKTQRLVDENVKVTGENVQ LHLSTNAGKVLAKAEKEANALKDQYVSTEHIFLALVEADNKAGDMLRKSGISKKEVLSALKDLRKGQSVNSQDPEAKMQA LDKYCRDLTALAEAEKIDPVIGRDEEIRRVMQVLSRRTKNNPVLIGEPGVGKTAIVEGLARRIVSQDVPEGLKDKRLLAL DLGALVAGAKFRGEFEERLKAVITEIEKSEGSIILFIDELHTLVGAGATEGAMDASNLLKPALARGELRAIGATTLDEYR KYIEKDKALERRFQQVYCKEPSVEDTISILRGLKDKYEVHHGVRIKDDALVAAAVLSNRYITNRFLPDKAIDLVDEAASQ LKIEIDSQPTELDKIERKILQLNIEKQALSKENDAASKERLEKLEKELSELSEERNAMKLQWDNEKGRIEETRKLKEELE ALNIKETQYTREGNLAKAAEIKYGKIPELQKKLEEATKAMEEAKNSDKKGLLREEISEDDIARVISVWTGIPVSKMLTSE KQKYLQLEEVLHKRVVGQDEAITSVADAIRRNRAGLSDENKPLGSFLFIGPTGVGKTELAKTLADFLFSDEKALTRIDMS EYMEKFSVTRLIGAPPGYVGYDEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRIVDFKNAIII MTSNLGSDLILEANDTNDIKEKIQELLKISFRPEFLNRIDEIITFTRLDKKYIAEIVRNQIARVANRLKDRRITLDVSDE AIDYIADIGYDPQFGARPLKRAIQNFIENQLAKEMLAGKYLEGDTIKVIKSGDGLVFEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-97 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_006707813.1 | ATP-dependent Clp protease ATP-binding subunit ClpB | VFG2084 | Protein | 2e-105 | 43 |
| clpB | YP_006707813.1 | ATP-dependent Clp protease ATP-binding subunit ClpB | VFG2076 | Protein | 1e-109 | 41 |
