Gene Information

Name : LMOSLCC5850_1569 (LMOSLCC5850_1569)
Accession : YP_006696396.1
Strain : Listeria monocytogenes SLCC5850
Genome accession: NC_018592
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1539824 - 1540510 bp
Length : 687 bp
Strand : +
Note : -

DNA sequence : 
ATGAAATTACTTATGATAGAAGATAATGTAAGTGTCTGTGAAATGATAGAAATGTTCTTTATGAAAGAAGAAATTAATGC
TACATTTGTTCATGATGCCAAAATGGGTTATGAAGCGTTTTTTAAAGATGATTATGATATTGCGATTATTGACCTAATGC
TTCCTAATATGGACGGAATGACCATTTGCCGTAAAATCCGTGAAGTAAGCGATGTGCCAATTATCATTTTAACGGCTAAA
GAGTCAGAATCCGATCAAGTGCTTGGTCTCGAAATGGGCGCAGATGACTATGTAACAAAACCATTTAGCCCACTTACTTT
AATGGCTCGAATTAAAGCTGTTACACGCCGCAAAAATAGTGCCACTTCTACAGAAAATAATGAAGATATCCTAGAAACAA
CTTATTTTAAAATTAGTAAACGCACACGCGAAATTTTTTATCAAGATGAGCTACTTGATGCTCTAACACCTAAAGAATTC
GATTTACTATATTTTTTGATGCAACATCCACGACAAGTGTTTTCAAGAGAACAATTGCCGGAACAAGTTTGGGGTTATCA
GTTCTACGGAGATGAGCGCACAGTGGACGTTCACATCAAACGTTTACGCCAAAAAATCGCCACCGAAACAAAGCCATTTT
TGCACACCGTCTGGGGTGTTGGCTACAAATTTGATGAAACGGAATGA

Protein sequence : 
MKLLMIEDNVSVCEMIEMFFMKEEINATFVHDAKMGYEAFFKDDYDIAIIDLMLPNMDGMTICRKIREVSDVPIIILTAK
ESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNSATSTENNEDILETTYFKISKRTREIFYQDELLDALTPKEF
DLLYFLMQHPRQVFSREQLPEQVWGYQFYGDERTVDVHIKRLRQKIATETKPFLHTVWGVGYKFDETE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 4e-34 47
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 9e-34 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_010400.5986590.p0 Protein 2e-36 45
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_002952.2859905.p0 Protein 5e-38 45
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_009782.5559369.p0 Protein 6e-38 45
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_002951.3237708.p0 Protein 6e-38 45
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_007622.3794472.p0 Protein 5e-38 45
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_002758.1121668.p0 Protein 6e-38 45
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_009641.5332272.p0 Protein 6e-38 45
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_013450.8614421.p0 Protein 6e-38 45
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_007793.3914279.p0 Protein 6e-38 45
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_003923.1003749.p0 Protein 5e-38 45
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_002745.1124361.p0 Protein 6e-38 45
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_012469.1.7686381. Protein 9e-40 44
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator DQ212986.1.gene4.p01 Protein 6e-31 44
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator AM180355.1.gene1830. Protein 2e-30 44
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator CP000647.1.gene2531. Protein 7e-28 43
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator CP001918.1.gene3444. Protein 3e-28 43
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_012469.1.7685629. Protein 7e-37 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator AE016830.1.gene1681. Protein 2e-38 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator HE999704.1.gene2815. Protein 7e-43 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator AE015929.1.gene1106. Protein 3e-28 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator FJ349556.1.orf0.gene Protein 4e-36 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_014475.1.orf0.gen Protein 3e-34 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_005054.2598277.p0 Protein 3e-34 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 3e-31 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 3e-31 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 3e-31 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 3e-31 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 3e-31 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 3e-31 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 3e-31 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 3e-31 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator AF130997.1.orf0.gene Protein 1e-28 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator BAC0039 Protein 4e-28 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator CP000034.1.gene2186. Protein 4e-28 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_002695.1.916589.p Protein 4e-28 42
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_011595.7057856.p0 Protein 2e-36 41
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator NC_010410.6002989.p0 Protein 2e-36 41
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator BAC0125 Protein 6e-27 41
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator CP000034.1.gene3671. Protein 3e-36 41
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator CP001138.1.gene2239. Protein 2e-27 41
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator BAC0596 Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator VFG1563 Protein 2e-34 47
LMOSLCC5850_1569 YP_006696396.1 DNA-binding response regulator VFG1702 Protein 4e-34 47