|
Name : clpC (LMOSLCC2372_0234) Accession : YP_006683561.1 Strain : Listeria monocytogenes SLCC2372 Genome accession: NC_018588 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit Function : - COG functional category : - COG ID : - EC number : - Position : 250545 - 253007 bp Length : 2463 bp Strand : + Note : - DNA sequence : ATGATGTTTGGACGATTTACGCAAAGAGCTCAGAAAGTACTCGCGTTGTCACAAGAAGAGGCGATGCGTTTGAATCATAG TAATTTAGGAACAGAACATATTTTATTAGGGCTTGTAAGAGAAGGCGAAGGAATTGCGGCGAAAGCTCTCTATGAACTGG GAATTAGTTCTGAAAAAGTGCAGCAAGAGGTAGAGGGATTAATTGGGCATGGGGAAAAAGCTGTGACGACGATCCAATAT ACACCTCGTGCGAAAAAAGTAATTGAACTTTCCATGGATGAGGCTCGTAAATTAGGCCATACTTACGTTGGGACAGAACA TATCTTACTTGGGCTTATTCGTGAAGGCGAAGGAGTTGCGGCACGCGTTTTAAGTAATCTTGGTATTAGTTTGAATAAAG CTCGGCAGCAAGTTCTACAGCTCTTAGGCGGCGGTGATGCTACTGGGGCGGGGAGACAAACAAATACGCAAGCTACACCG ACTTTAGATAGTTTGGCACGTGACTTAACGGTTATTGCTCGGGAAGATAATTTGGATCCGGTTATTGGTCGTTCTAAAGA AATCCAACGTGTGATTGAAGTACTTAGTCGCCGGACGAAAAATAACCCGGTACTCATTGGGGAACCTGGTGTCGGTAAAA CAGCGATTGCTGAAGGCTTAGCGCAACAAATTGTTCGTAATGAAGTACCTGAGACCTTACGTGGAAAACGTGTAATGACA TTGGATATGGGAACTGTTGTGGCAGGTACAAAATATCGTGGTGAATTCGAAGACCGTTTGAAGAAAGTAATGGATGAAAT TCGCCAAGCTGGTAATGTTATTCTATTTATTGATGAGTTGCATACTTTAATTGGTGCTGGTGGGGCGGAAGGTGCGATTG ATGCATCGAATATCTTGAAGCCACCTCTAGCTCGTGGAGAGTTGCAATGTATTGGGGCAACAACGCTGGACGAGTACCGT AAATATATTGAAAAAGATGCTGCGCTTGAGAGACGTTTCCAACCGATTAAAGTAGACGAACCAACTGTAGAAGAATCTAT TCAAATTTTACATGGATTGCGTGATCGTTATGAAGCGCATCACCGAGTTGCAATTACGGATGAAGCACTTGAGGCCGCTG TTCGTTTATCTGATCGCTATATTTCAGACCGTTTCTTACCTGATAAAGCGATTGATGTTATCGATGAATCTGGTTCTAAA GTACGTTTGAAATCTTTTACAACGCCAAAAAATGTAAAAGAAATGGAAAATAATTTATCCGATTTGAAAAAAGAAAAAGA TGCGGCTGTTCAAGGTCAAGAATTTGAAAAAGCAGCGTCATTACGTGATAAAGAACAAAAACTCAAAAAATCATTAGAAG AAACTAAAGCGAATTGGCAAGAAAAACAAGGGCTTGACCATAGTGAAGTAACAGAAGATATTGTCGCTGAAGTGGTTGCT AGTTGGACTGGGATTCCAGTTGCGAAACTTGCGGAAACAGAGACAAATAAACTGTTAAATATGGAAAAACTTTTACATGA ACGTGTGATTGGACAAGATGCAGCGGTTAAAGCTGTATCGCTAGCTGTACGTCGAGCTCGTGCAGGCCTTAAAGATCCGA AACGTCCGATTGGTTCCTTTATTTTCCTTGGACCTACTGGTGTTGGGAAAACAGAACTTGCGCGTGCACTTGCTGAGTCG ATGTTTGGCGATGAGGATTCGATGATTCGGATTGATATGTCTGAGTACATGGAGAAATTTTCAACTGCTCGTTTAGTTGG GGCTCCTCCAGGTTATGTAGGATACGAAGAAGGTGGACAGCTGACAGAAAAAGTTCGGCAAAAACCTTATTCAGTAGTCC TTTTAGATGAAATTGAAAAAGCACATCCGGATGTATTTAATATGTTGCTACAAGTACTGGATGATGGACGTTTGACTGAT TCTAAAGGGCGAGTAGTTGATTTTAGAAATACAGTTATCATTATGACTTCCAATATTGGAGCTCAAGAAATGAAACAAGA TAAATCAATGGGCTTTAATGTTACTGATCCACTTAAAGACCATAAAGCGATGGAGCACCGCGTTTTACAAGATTTAAAAC AGGCGTTCCGACCAGAATTTATCAACCGAATTGATGAAACAATTGTATTCCATTCGCTGCAAGAAAAAGAATTGAAACAA ATTGTTACTTTACTAACTGCTCAATTAACAAAACGCTTAGCCGAACGCGATATTCACGTGAAATTAACTGAAGGTGCGAA ATCCAAAATCGCTAAAGATGGCTACGATCCAGAGTACGGAGCTCGTCCTTTAAAACGGGCTATTCAAAAAGAAGTGGAAG ACATGCTTTCTGAAGAATTGCTTCGTGGTAACATTAAAGTAGGCGATTACGTTGAAATTGGTGTGAAAGATGGCAAGTTA GAGGTTAGAAAAAAAGATGCTCCTAAAAAGAAAACAACCTCTAAAAAAGTAAAAGCTAAATAA Protein sequence : MMFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQQEVEGLIGHGEKAVTTIQY TPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDATGAGRQTNTQATP TLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMT LDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILKPPLARGELQCIGATTLDEYR KYIEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYISDRFLPDKAIDVIDESGSK VRLKSFTTPKNVKEMENNLSDLKKEKDAAVQGQEFEKAASLRDKEQKLKKSLEETKANWQEKQGLDHSEVTEDIVAEVVA SWTGIPVAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES MFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDEIEKAHPDVFNMLLQVLDDGRLTD SKGRVVDFRNTVIIMTSNIGAQEMKQDKSMGFNVTDPLKDHKAMEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQ IVTLLTAQLTKRLAERDIHVKLTEGAKSKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIKVGDYVEIGVKDGKL EVRKKDAPKKKTTSKKVKAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 58 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 9e-97 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_006683561.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0079 | Protein | 0.0 | 100 |
| clpC | YP_006683561.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0080 | Protein | 1e-155 | 53 |
