Gene Information

Name : RM11_0079 (RM11_0079)
Accession : YP_006664541.1
Strain : Bartonella quintana RM-11
Genome accession: NC_018533
Putative virulence/resistance : Virulence
Product : Iron transport system membrane protein yfeD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 105080 - 105985 bp
Length : 906 bp
Strand : +
Note : -

DNA sequence : 
ATGATTGATCAATTACTCCTTCCTTTTCAGTTTTCTTTTATGCTTAAGGGCATGTTTATTGTCATAATCCTTTCTGTTCC
AATGGCGATGCTTTCTTGTTTTCTTATTTTGAAAGGATGGGCACTTTTAGGTGATGCAATTTCCCATGCGGTTTTTCCTG
GTGTCGTTTTTGGTTATATGACAACGCCGTGGGTGATAACATTTTTGACTTCTTTGCCATTTGCTTGGTTTCAGCATGTG
CATCCGGCTAATGTTACAATGACTTTGATTACTTGTGGTGCTTTTGTTGCGGGTATGATTTGTGCACTCGCAACAGGTTT
TTTAGGAAGCAATAGCCGTATTAAACAGGATACGGTGATGGGCGTTGTTTTTTCATCTATGTTTGGTTTGGGGCTGGTTT
TAGCAACCTCTATTTATAGTAGCTTAGATTTGAATCACATTTTATTTGGTAATCTTTTGGGTGTTAATTGGCTTGATATT
ACGCAGACGGCGATAATTTCTGCTGTTGTCACCTTTATTTTAGGAGCGAAATGGCGCGATTTTATGCTATACATTTTTGA
TTCAGTTCAAGGTCGTGCAATGGGATTACGAATATCGGTACTCCACTATACCCTTTTAGCAATGATTTCTCTCACTATTG
TTGCGGCTTTGAAAGCTGTTGGAATTGTTCTCGTTATTTCTTTATTGATAGCGCCGGGAGCAATAGCTTATCTTATCACA
AAGCGGTTTTCTCTTATGTTGATAATCGCTATACTTATTGCTGCTTTTTCTGGTTTTTTAGGTGTTTATCTAAGTTTATT
TATTGGCTCTGATTCTGCTTCCACGATTGTATTGATTTTAACACTGATCTTTGTAACCATTTTTATGTCGGTTTTCTTGC
GTCGAATTACCGTTCATGAAATTTGA

Protein sequence : 
MIDQLLLPFQFSFMLKGMFIVIILSVPMAMLSCFLILKGWALLGDAISHAVFPGVVFGYMTTPWVITFLTSLPFAWFQHV
HPANVTMTLITCGAFVAGMICALATGFLGSNSRIKQDTVMGVVFSSMFGLGLVLATSIYSSLDLNHILFGNLLGVNWLDI
TQTAIISAVVTFILGAKWRDFMLYIFDSVQGRAMGLRISVLHYTLLAMISLTIVAALKAVGIVLVISLLIAPGAIAYLIT
KRFSLMLIIAILIAAFSGFLGVYLSLFIGSDSASTIVLILTLIFVTIFMSVFLRRITVHEI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-57 51
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-57 51
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 8e-58 51
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 8e-58 51
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 7e-58 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RM11_0079 YP_006664541.1 Iron transport system membrane protein yfeD BAC0352 Protein 4e-58 51
RM11_0079 YP_006664541.1 Iron transport system membrane protein yfeD BAC0442 Protein 5e-47 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RM11_0079 YP_006664541.1 Iron transport system membrane protein yfeD VFG0528 Protein 4e-58 51