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Name : R0052_03345 (R0052_03345) Accession : YP_006655425.1 Strain : Lactobacillus helveticus R0052 Genome accession: NC_018528 Putative virulence/resistance : Unknown Product : DNA polymerase I Function : - COG functional category : - COG ID : - EC number : - Position : 583670 - 586333 bp Length : 2664 bp Strand : + Note : COG0258 5'-3' exonuclease (including N-terminal domain of PolI) DNA sequence : ATGGCAGATAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGA ATCTTTCAAGAGTCCGGATGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACG TTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGT GGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAAC TTATGAATTGAAGAATTATGAAGCAGATGACATCATTGGTACTTTTGCTGCGAAGGGTGAAAAGGCCGGGTTCACAACCA CGATCGTAACTGGTGACCGCGACTTGACCCAACTTGCGTCCGACAAGACGACTGTCGAAGTAACCAAGTCTGGTGTTTCT CAACTTGAAGCTTATACACCAGAACATATGAAGGAAGTTAACGGCGTCACTCCAACCGAATTCATCGACATGAAGGCCTT GATGGGTGATAACTCTGATAACTACCCAGGTGTTGAAGGCATCGGTCCTAAGACAGCTTCTAATTTAATTCAGGAATATG GTTCAGTAGAAAATCTTTACGATCATATTGATGAAATGAAAAAATCTAAGCGTAAGGAACGTTTAATTCGTGATAAAGAC AAGGCCTTTTTAGCTAAAAAACTTGCCACGATTGATCGTGATTCACCAGTTACCATTGATATTGATGACGTAAAACGCGA GCCAGTTGATTATGAAAAGCTGTGGCAATTCTACGAAAAGATGAACTTCCGCAAGTTTTTGGCAGAACTTAATGCTTCAG GTGCCGGTCAAGATGGTGCCGAAGTTGAAAAAGTAGAATACACTGTTTTAAACGATGACAATGTTAAAGATGTTAAAGCC ACTGAAAAAGACACTGTTGAATTTTATCTAGAAATGCTCGGCGCTAACTACCACTTAGCAGATTTTGTCGGCTTTAGCTT GAAGATCAACGACAAGATTTATGTTTCAAGAGACGTGGACTTGCTTGAAGAAGACAATATCAAGCACATCTTAGAAGATG AAAAGATCAAGAAGAACGTCTTTGACTTAAAGAGATCCATGGTTGGGGCCCATCGTTTAGGCATTCATACGCACGGCCTT GATTATGATATGCTTTTAGCCTCATATCTAGTTAATAATGAAAACAACTCTAATGATCTTGGTGAAATTGCCCATCTTTA TGGGGATTATTCCGTTAAGACTGACCTTGAAGTCTACGGCAAAGGTAAGAGTGAACACATCCCTGATGACGATGATGAAT TATTCAACCACTTAGCTTCCAAGGTCAACGCCATTGAATCACTCAAGAAGACTCTGCTTGAAAAGCTCAAAGACCACGAA CAAGATGATTTGTTTGATACGATTGAAATTCCAACTGCTCGAGTACTGGCTAAGATGGAAATCAATGGTATGAAGGTCGA AGCAAGTACTTTAATCCAATTGCAAAATGAATTTGCCGTGAAGTTGCAGGATTTAGAGAAGAAAATCTATCAACAAGCTG GGGAAGAATTTAATCTAAACTCACCAAAACAATTAGGTCATATTTTGTTTGAAAAGTTAGGCTTGCCAGTTTTGAAGAAG ACCAAGACAGGCTATTCAACTTCAGTTGAAGTGCTCGATCAATTGAAGACACAAAGCCCAATTGTTAAAGAAATTCTTGA TTATCGTCAAATTGCTAAAATTCAATCAACTTATGTTAAGGGCTTGCTTGATGTAATCCAACCTGATGGTCGTGTTCATA CGCGCTATTTACAAACCTTAACTGCAACTGGACGTTTATCTAGTGTTGATCCTAACTTGCAAAACATTCCAACTCGTACT GAGGAAGGCAAGCAGATTAGAAAAGCGTTTGTCCCAAGTGATCCTGATGGCTATATTTTCTCTTGTGACTACTCACAAGT TGAACTCCGTGTGCTCGCCCATGTTTCTGGTGATCAAAACATGCAAGAAGCCTTCAAGACCGGGTATGACATCCACTCAC ACACCGCGATGAAGATCTTCCACTTGGAGTCACCGGATGAGGTAACACCACTGATGCGTCGTCACGCCAAGGCAGTTAAC TTCGGTATCGTCTACGGTATTTCCGATTATGGTTTGTCCAAGAATTTAGGTATTTCTAGGAAACGTGCGCAAGAATTTAT CGATAATTATTTTGAACAATATCCTCAAATCAAGGATTACATGAATAAAGCAGTACAAGAAGCACGTGACAAGGGCTATG CGGAAACGATCATGCATCGCCGCAGATATTTGCCAGATATTCATGCTAAGAAATACACTGTCCGTGCTTTTGCGGAAAGA ACCGCCATTAATTCTCCAATTCAAGGTTCAGCTGCCGATATTATCAAAATCGCTATGATCAATATGCAAAAGAAGTTAGA TGAACTTCATTTGAAGACTAAAATGGTAGTGCAGGTACATGACGAATTGATTTTTGATGTACCAAAGGATGAACTGGAAA CAATTAAAAAGATTGTACCTGAAGTAATGCAATCAGCTGTTAAGTTAGATGTGCCTTTGATTGCTGATTCTGGTTGGGGA CACAATTGGTATGATGCAAAGTAG Protein sequence : MADKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLLKDVDPTHVLVAFDAGKVTFRTKMYGEYKG GRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGTFAAKGEKAGFTTTIVTGDRDLTQLASDKTTVEVTKSGVS QLEAYTPEHMKEVNGVTPTEFIDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRDKD KAFLAKKLATIDRDSPVTIDIDDVKREPVDYEKLWQFYEKMNFRKFLAELNASGAGQDGAEVEKVEYTVLNDDNVKDVKA TEKDTVEFYLEMLGANYHLADFVGFSLKINDKIYVSRDVDLLEEDNIKHILEDEKIKKNVFDLKRSMVGAHRLGIHTHGL DYDMLLASYLVNNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIESLKKTLLEKLKDHE QDDLFDTIEIPTARVLAKMEINGMKVEASTLIQLQNEFAVKLQDLEKKIYQQAGEEFNLNSPKQLGHILFEKLGLPVLKK TKTGYSTSVEVLDQLKTQSPIVKEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRT EEGKQIRKAFVPSDPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVN FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAER TAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVKLDVPLIADSGWG HNWYDAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| polA | YP_281523.1 | DNA polymerase I | Not tested | Not named | Protein | 0.0 | 54 |
