Gene Information

Name : R0052_10715 (R0052_10715)
Accession : YP_006656644.1
Strain : Lactobacillus helveticus R0052
Genome accession: NC_018528
Putative virulence/resistance : Resistance
Product : ABC transport protein ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1899450 - 1900124 bp
Length : 675 bp
Strand : -
Note : ABC transporter ATPase; COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGGCAGTAATTGAGTTGAAAAATGTAGAAAAATTTTACGGTAAAGGCGATGCTCGAGTTGAAGCGTTAAAGGATATCAA
TTTTGAAGCCGATAAAAGCAAATTGGTTTTAATTATGGGACCGTCCGGTGCAGGTAAAAGTACTTTTTTAACGATTGCCG
GATCGCTGCAAAAACCAACTTCAGGCCAAGTTATCGTCAATGGGGAAGATATCAGCAAGTTTTCTGATAAAAAAAGAAAC
AGCTTACGTTTAAATGAAATTGGTTTTATTTTACAAGCTTATAATTTAGTTCCATATCTGACTGTTCATGATCAATTTGT
TTTGGTTGATAAAGTTAAAAAAGAAGGTAATTTGTCCAAAGAAGATTTAGACAAATTGCTCAAAGATTTGGGGATTACTA
AATTAGTTAAAAAATATCCTAATGAATTGTCAGGCGGTCAGCAACAGCGTGTGGCAATTGCACGTGCACTTTATGCTAAT
CCTGCAATTTTGCTGGCTGATGAGCCTACGGCATCTCTTGATACGCAAAACGTAGAAGAGGTTGGCAAGTTGTTTAAGAA
ACTTGCTAAAGAACGTGAAAAAGCAATTTTGATTGTCACCCACGATCCTCGTCTTGAAAAATATGCGGATCATATTTATG
AGATGACGGATGGAAAAATGAGTCAAAAGAAATAA

Protein sequence : 
MAVIELKNVEKFYGKGDARVEALKDINFEADKSKLVLIMGPSGAGKSTFLTIAGSLQKPTSGQVIVNGEDISKFSDKKRN
SLRLNEIGFILQAYNLVPYLTVHDQFVLVDKVKKEGNLSKEDLDKLLKDLGITKLVKKYPNELSGGQQQRVAIARALYAN
PAILLADEPTASLDTQNVEEVGKLFKKLAKEREKAILIVTHDPRLEKYADHIYEMTDGKMSQKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 1e-43 51
SARLGA251_00480 YP_005754062.1 ABC-type transport system ATPase Not tested Type-XI SCCmec Protein 8e-41 48
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-28 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-28 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
R0052_10715 YP_006656644.1 ABC transport protein ATPase component CP001581.1.gene798.p Protein 3e-32 42