Gene Information

Name : R0052_09940 (R0052_09940)
Accession : YP_006656513.1
Strain : Lactobacillus helveticus R0052
Genome accession: NC_018528
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1774536 - 1775393 bp
Length : 858 bp
Strand : -
Note : COG3328 Transposase and inactivated derivatives

DNA sequence : 
ATGACCAAGGCGTCACCTACCAGAGAAATAGCCGATCTGATTGAAAAGATGTACGGCAGCCATTACAGTCCGGCTCAGGT
ATCAAATATTTCCAAGCAAATGATTCCAAAGGTTGAAGCCTATCACAAACGCAAGCTTAGCGACAGGTTCTTTTGCGTTT
ATCTTGACGCAACGTATCTTCCGCTGTGCCGAGAAACGTTTGAGCGTGAAGCCGTCTATATTGCCATCGGCATCAGGCCC
AATGGCCATAAAGAAGTAATCGACTACTGCATAGCACCCAGCGAAAACGTCGAAGTTTGGACTGAAATGCTTCAAAACAT
GAGATCGCGGGGTTTGAAGCAAGTCGAGCTTTTCTTGTCTGACGGTGTTGTCGGCATGAAAACAGCTCTGGCAAAGACTT
ATCCCAAAGCACATTTTCAGCGCTGCCTGGTTCATGTCATGCGCAATATTTGCAATAAAGTGCGTGTTGACGATCGTGAG
ACAATCATGAACGATTTCAAGCAGATTCATAGGCAGCCTAACAAGACAGCCGCCGTACAAACTCTTCATGCATTCTATGA
CAAATGGAACAAGGCATACAATCATGTCATTAGGAATCTAAAAGACATTGAGCCTGATCTATTGGTCTTTTACAACTATC
CCAAACAGATCAGGCCCTCAATCTATTCCACCAACATGATTGAATCCTTTAACAATGTCGTTAAACGCAAGGCAAAGCCC
AAAGCAGAGTTTCCAAGTGAGCAGTCGCTTGATACTTTCATTGGCATTCAGGCAATGAGTTACAATGATCGCTACTTCAA
CCGAATCCATAAGGGCTTTGGTCAAGTGCAGGATACATTGGAATCCTACTTCGACTAA

Protein sequence : 
MTKASPTREIADLIEKMYGSHYSPAQVSNISKQMIPKVEAYHKRKLSDRFFCVYLDATYLPLCRETFEREAVYIAIGIRP
NGHKEVIDYCIAPSENVEVWTEMLQNMRSRGLKQVELFLSDGVVGMKTALAKTYPKAHFQRCLVHVMRNICNKVRVDDRE
TIMNDFKQIHRQPNKTAAVQTLHAFYDKWNKAYNHVIRNLKDIEPDLLVFYNYPKQIRPSIYSTNMIESFNNVVKRKAKP
KAEFPSEQSLDTFIGIQAMSYNDRYFNRIHKGFGQVQDTLESYFD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0035 AAM75241.1 EF0035 Not tested Not named Protein 1e-51 50
EF0595 NP_814357.1 ISEf1, transposase Not tested Not named Protein 2e-67 49
unnamed AAM21176.1 transposase Not tested Not named Protein 8e-68 49
unnamed AAM21184.1 transposase Not tested Not named Protein 8e-68 49
ef0057 AAM75262.1 EF0057 Not tested Not named Protein 8e-68 49