Gene Information

Name : PCC21_008550 (PCC21_008550)
Accession : YP_006645511.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : outer membrane usher protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 970824 - 973322 bp
Length : 2499 bp
Strand : -
Note : -

DNA sequence : 
ATGGCAATGAAAAATATTACGTTCAAAGAAAAAATAAAACCCGCGCTATTTCGTTACGGTTTTTTTATTTTTTCTTTGAA
TACAGCATCGCTCAGTGCAACGGAATTTAACGTTAACGTACTGGATGTCGACGATCGTAATGACATTGATCTTAGCCATT
TTTCCGATCCCGAATATGTCACGCCCGGTACCTATCTTTTATCAATAAAAGTCAACGCGCGTGAAATACAGCAGCAGATG
ATTAACTACCTGCCGGAAGGCAATCATCGCGCTCGGCCAACAGCCTGTCTCTCGCCCGAACTCGTCAATAAACTGGCGCT
GAAAAAAGAGGCGCGTGACAAAGCAGAATTATGGAATAACGGCGCATGTGTCGATCTGACGCCTATTGCTGGCGTCACCG
TCTCTAACCAGATAGGCATGGGAACGCTGAATATTACGATCCCGCAGGCCTGGCTGGCGTACAGCGATCGCAACTGGATT
CCACCCGAACAGTGGGATCACGGCATCGGCGGTGCGCTGCTGGACTATAACCTCGTTGGGAACGTACGCCGTGAGACCAA
CGGCAGAGGCACATCACACTACCTCAGCAGCTACGGCACCACCGGATTTAATCAGGGAGCCTGGCGCTATCGTGCCGATT
ATCGCTATTTTCTGCAAAAATCGCGCAACGCGAATCGCGATAGCTTCTCGTGGGATCAGTTTTACGCCTATCGTCCGCTG
CCAACGCTTTCAGCCGATCTCAAGCTGGGGGAAATATATTTCAGCAGCAACCTGTTCGATAGCTATCGCTTTACCGGCGT
GTCATTAGCCAATAACGAGAACATGCTTCCCCCTTCGCTGCGCGGCTACGCGCCCGAAATTCGCGGCGTCGCCAAGTCCA
ACGCGACGGTAACCGTGACGCAAAATGGCAGGCTGATCTATGAAACCACCGTACCTGCCGGCCCCTTTGCCATTCAGGAT
ATGAAGAACGGCGTCAGCGGTACGCTGGATGTCCGCGTAACGGAAGAAGACGGCACGGTGACCACGTTCCAGACCGAATC
AGCCAACCTGCCTTACCTGACACGGCCGGGACACGTACAGTACAAACTCGCCGCGGGTAAACCTTCGAATACCAACCACC
GTCTGCAAGGCCCGGCCTTTTCTGCTGCCGAAGCCTCATGGGGATTATCCAACGCATGGTCGGTGTACGGCGGCAGCATA
TTGTCCGATGGCTATCAGTCCTGGTCGGCAGGCATAGGGAAAAACCTTTACCTGCTGGGCGCGCTGTCGGCGGATATCAC
ACAGTCACGCGCGACGCTGCCAGCAACGTCCTCGTCGCAGATGGGGCACGCTTTCTCACTTAACTGGTCTAAATATTTCA
ACTCGTTCGATAGCCAGATCAGTTTTGCGGGCTACCGCTTTTCAGAAAAGACCTACATGAGCATGGCGCAGTATCTCTAT
GCGCTGAATCTCGATAGCCGCTATCGCAATGAAAAAGAGCGCTACACCATTACGCTCTCCAAAAACTTCGCGACGCGGGA
ATCATCTCCCCTGCTGAGCGGGCTGTCGACCTACGTGACCTATACGCGCCAAACCTATTGGAATGAAGCAGAGCAGGATC
GCTATGGGATTTCGCTAAATAAGTACTTCGATATCGGCGCAGTTAAAGGCATTGCCGCGAATCTCTCGGCCTATCGCACC
GAATTCAACCGCCGTACCGATGACAGCCTGTATCTGAGCTTTTCTATCCCGCTCGGCGAGAAGGATCGCCTGAGCTACAG
CATGGGGCGCTATAACGACAGCAGCAATCAGGCGCTGACCTATTCCAATAACGCCGATCCGCGCCGCACCTGGAATCTGA
GCACCCGGCACGACAGCAAAGAGAATACTTACCTGAGCGGCAACTATACCCATCTGGCACCGATGACGGACGCCACCATG
GGCGTCGCCTGGCAGCAAGATCGCTATACCTACCTGAACGGTTCACTGCGCGGCGGTATTACCGCCACCCGCCACGGCGT
CGCAGCACACCCGAAAGGTAATCAGGGCGGCACCCGCATCATGGTCGATACCGAACAAGCGGGCGTGCCGTTCACCGGTA
GTCAGGTCGAGACCAACCGCTATGGGCTGGCCGTGATTGCTGGCACCAGCAGCTACTACGACGTATCGACCCGCATTGAT
CTTCAAAAATTACCGCAACACATTGAAGCGGTGACGACGGTCGTTCAGGGCACGCTGACCGAAGGTGCCATTGGCTACCG
TAAATTCGACGTGGTGAGCGGGGCAAAAATCATGGCGCACGTCGCGCTGGCCGATGGCAAAAATCCCCCGTTCGCCGCCC
AGATCAAAAATAAGAAAGGCCGCGATATCGCCATGATCACCAACGGCGGGCAGGCCTATATCACGGGCGTATCGCCTGAC
GAAACGCTGTCCGTCATCTGGGAGGGCAGAACACAGTGCGCCATCACCCTACCCGCCACCTTAAATCACCTTGATGCCCT
GCTGCTTCCTTGTAAATAA

Protein sequence : 
MAMKNITFKEKIKPALFRYGFFIFSLNTASLSATEFNVNVLDVDDRNDIDLSHFSDPEYVTPGTYLLSIKVNAREIQQQM
INYLPEGNHRARPTACLSPELVNKLALKKEARDKAELWNNGACVDLTPIAGVTVSNQIGMGTLNITIPQAWLAYSDRNWI
PPEQWDHGIGGALLDYNLVGNVRRETNGRGTSHYLSSYGTTGFNQGAWRYRADYRYFLQKSRNANRDSFSWDQFYAYRPL
PTLSADLKLGEIYFSSNLFDSYRFTGVSLANNENMLPPSLRGYAPEIRGVAKSNATVTVTQNGRLIYETTVPAGPFAIQD
MKNGVSGTLDVRVTEEDGTVTTFQTESANLPYLTRPGHVQYKLAAGKPSNTNHRLQGPAFSAAEASWGLSNAWSVYGGSI
LSDGYQSWSAGIGKNLYLLGALSADITQSRATLPATSSSQMGHAFSLNWSKYFNSFDSQISFAGYRFSEKTYMSMAQYLY
ALNLDSRYRNEKERYTITLSKNFATRESSPLLSGLSTYVTYTRQTYWNEAEQDRYGISLNKYFDIGAVKGIAANLSAYRT
EFNRRTDDSLYLSFSIPLGEKDRLSYSMGRYNDSSNQALTYSNNADPRRTWNLSTRHDSKENTYLSGNYTHLAPMTDATM
GVAWQQDRYTYLNGSLRGGITATRHGVAAHPKGNQGGTRIMVDTEQAGVPFTGSQVETNRYGLAVIAGTSSYYDVSTRID
LQKLPQHIEAVTTVVQGTLTEGAIGYRKFDVVSGAKIMAHVALADGKNPPFAAQIKNKKGRDIAMITNGGQAYITGVSPD
ETLSVIWEGRTQCAITLPATLNHLDALLLPCK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfC CAD42029.1 PrfC protein Virulence PAI II 536 Protein 1e-155 44
papC NP_755465.1 PapC protein Virulence PAI I CFT073 Protein 3e-155 44
papC_2 NP_757034.1 PapC protein Virulence PAI II CFT073 Protein 3e-155 44
papC YP_002414015.1 Outer membrane usher protein PapC Not tested Not named Protein 1e-155 44
papC YP_854254.1 outer membrane usher protein PapC Virulence PAI I APEC-O1 Protein 1e-154 43
papC AAZ04424.1 outer membrane usher protein Virulence PAI I APEC-O1 Protein 1e-154 43
pixC CAE85159.1 PixC protein Not tested PAI V 536 Protein 5e-157 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_008550 YP_006645511.1 outer membrane usher protein VFG1548 Protein 6e-156 44
PCC21_008550 YP_006645511.1 outer membrane usher protein VFG0884 Protein 1e-155 44
PCC21_008550 YP_006645511.1 outer membrane usher protein VFG0895 Protein 1e-155 44