Gene Information

Name : PCC21_008540 (PCC21_008540)
Accession : YP_006645510.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : fimbrial chaperone
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 970037 - 970786 bp
Length : 750 bp
Strand : -
Note : -

DNA sequence : 
ATGAAACACACATTTTATCAGCGAGCAGCAGGATTCCTCATCGGCTGCCTGTTTTTGATGCCCACAGCCTATAGCGCCCT
GAGCCTCGATCGCACCCGCGTTATTTTTAACGATGAGGAGCAATCGGCGACGGTCATGTTGATGAACCAAAACGTGGAGA
ACCCGTTTCTGGCGCAGTCCTGGCTGACGGATGATCGGCACAATAAAGTGACGACACCGCTGATGGTATTGCCGCCGCTA
CAGCGCATAGAAGCGAAAGGATATAGCCTGATCCGTCTGGTCAAAACAGAACAAATCAGCCAATTGCCAACCGACCGCGA
ATCGTTGTTTTACCTTAACGTCCGGGAAATTCCCCCCAAGACGGACAAGCCCAACGTATTACAGATAGCCATTCAGTCTG
AAATTAAGGTGTTCTTCCGCCCCCGTGGCGTAAAGCCAGCCAAAGACGAAATATGGCAGGAAAAACTGATCGTCCGCAAA
ACGGGAAACACCTTTCAGGTAGAAAACCCCACGCCGTACTACATCACGGTCAGCGGCATCCTGAAACAGCCCAAAGCGAC
GCGCGCCAACCCCACCAGCCTGCTGAAGGGAAACGCCTTTATGGTCGCGCCACGCTCAACGCTGTCGGTTGAGGTGAATG
ACGGCGCGGTCGATCGCTTCTATCTGTACTACGTCAACGATTACGGCGGCCATCTGGAGTTGCCTTTTACCTGCGCACAA
AACCAGTGCCAGCCCGCCATCCGTAAATAA

Protein sequence : 
MKHTFYQRAAGFLIGCLFLMPTAYSALSLDRTRVIFNDEEQSATVMLMNQNVENPFLAQSWLTDDRHNKVTTPLMVLPPL
QRIEAKGYSLIRLVKTEQISQLPTDRESLFYLNVREIPPKTDKPNVLQIAIQSEIKVFFRPRGVKPAKDEIWQEKLIVRK
TGNTFQVENPTPYYITVSGILKQPKATRANPTSLLKGNAFMVAPRSTLSVEVNDGAVDRFYLYYVNDYGGHLELPFTCAQ
NQCQPAIRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 6e-52 46
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 8e-48 43
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 2e-47 43
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 2e-47 43
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 2e-47 43
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 2e-47 43
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 1e-47 43
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 2e-40 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_008540 YP_006645510.1 fimbrial chaperone VFG1547 Protein 5e-48 43
PCC21_008540 YP_006645510.1 fimbrial chaperone VFG0896 Protein 9e-48 43
PCC21_008540 YP_006645510.1 fimbrial chaperone VFG0885 Protein 7e-41 42