Gene Information

Name : PCC21_004940 (PCC21_004940)
Accession : YP_006645150.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : peptide arylation protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 548732 - 550357 bp
Length : 1626 bp
Strand : +
Note : -

DNA sequence : 
ATGAGCATTGAATTTACGCCCTGGCCAGAGGAACTGGCGCAGCGTTATCGCGACAAGGGATACTGGATCGGTCTGCCGTT
AACGGATGCCTGGGAGCGCCATCTGGCGACGCAGCCTGACGCCGTTGCGGTGGTGTGTGGCGAGCGGCAATGGAGCTATC
GCGAGCTGGATCGGCAATCTTCCGCGCTGGCATCGCGCCTGACGGAAAGCGGCCTGCGCTGCGGCGACACCGCGCTGGTG
CAGTTACCGAACGTGGCCGAATTTTACCTGACCTTTTTTGCGTTGCTGAAAATGGGCGTCGCGCCGGTTAACGCGCTGTT
CAGCCATAACAAGCTGGAGCTGCTGTCGTACGCCACGCAGATCGAACCACGTTTACTGATCGCTTCGGCCGAACATCCAC
TGTTCGGCAACGGTGAGTTTCTGGATCGGCTACAGACGCAGGTTCCCCGCCTGCAAACGGTGGTGATGCTCGGCGACAGC
CCGCTGGGGCACAGTTTGTCAGACTGGTTGCAGCCGTGCGCGTCGACCAGCCAGTATCAGCCTTCTGCGTCGGGGCAGGT
CGCTTTCTTCCAGCTTTCTGGTGGCAGTACCGGTACGCCGAAGCTGATTCCCCGCACTCATGACGATTATTACTACAGCG
TGCGCCGCAGCGTGGAAATTTGCGAGCTGACGCCTCAAACCCGCTACCTTTGTGCCTTGCCTGCGCCGCATAACTTCCCG
CTAAGTTCGCCCGGTTCGCTCGGCGTGTTTTACGCCGGTGGACGCGTCGTGCTGGCGCCCGATCCGGGGGCGATGACCTG
CTTCCCGCTGATCGAACGCCATCAGATCGATATTACCTCGCTGGTGCCGCCCGCTGCCGCGCTGTGGATCCAGGCGGCCG
AACAGTTTGGTGACGCACTGCGTAGCCTGAAAATCTTGCAGGTGGGTGGTGCAAAGCTGAGTGAAACCGTCGCCCGTCGT
ATTCCGGCGGTATTGGGCTGTCAGCTACAGCAGGTGCTCGGCATGGCGGAAGGGCTGGTGAATTACACCCGACTGGACGA
CAGCGACGAGCACATTTTCACGACGCAAGGCTATCCGATGAGCCCGGACGATGAAGTGAAAGTGTTGGATATCGACGGTA
ATCCGGTGCCGAGAGGCGAGGCGGGGCTGCTGGCGACACGCGGCCCGTATACCTTCCGCGGCTATTACCGCAGCCCGGAA
CACAATGCCCGCGCCTTCGACAGTGAAGGCTTCTACCACTCGGGCGATGTGGTGCAGATGACCGAAGATGGCTATTTGCG
CGTGGTCGGGCGGGAGAAAGATCAGATTAACCGAGGCGGTGAAAAGATTGCCGCGGAAGAGATCGAAAACCTGTTGCTCA
AGCATGACGGCATTCTCCATGCCGCGCTGGTGTCCATGCCCGATCCGGTCATGGGCGAAAAGAGCTGCGCTTTTCTGGTG
GTCAGCGATCCCTCGCTGAAAGCCATCACGTTAAGAAAATATCTTCGCAATCAGGGTATTGCTGAATTCAAACTGCCGGA
CCGCTTCGAGATGATCGACACCTTGCCTGTTACGCCGGTCGGCAAGATTGATAAGAAATTGCTTCGTCAGCGCATCCAGA
CCCAACTTAGCACTCAAAATAAATAA

Protein sequence : 
MSIEFTPWPEELAQRYRDKGYWIGLPLTDAWERHLATQPDAVAVVCGERQWSYRELDRQSSALASRLTESGLRCGDTALV
QLPNVAEFYLTFFALLKMGVAPVNALFSHNKLELLSYATQIEPRLLIASAEHPLFGNGEFLDRLQTQVPRLQTVVMLGDS
PLGHSLSDWLQPCASTSQYQPSASGQVAFFQLSGGSTGTPKLIPRTHDDYYYSVRRSVEICELTPQTRYLCALPAPHNFP
LSSPGSLGVFYAGGRVVLAPDPGAMTCFPLIERHQIDITSLVPPAAALWIQAAEQFGDALRSLKILQVGGAKLSETVARR
IPAVLGCQLQQVLGMAEGLVNYTRLDDSDEHIFTTQGYPMSPDDEVKVLDIDGNPVPRGEAGLLATRGPYTFRGYYRSPE
HNARAFDSEGFYHSGDVVQMTEDGYLRVVGREKDQINRGGEKIAAEEIENLLLKHDGILHAALVSMPDPVMGEKSCAFLV
VSDPSLKAITLRKYLRNQGIAEFKLPDRFEMIDTLPVTPVGKIDKKLLRQRIQTQLSTQNK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
irp5 CAA73130.1 Irp5 protein Virulence HPI Protein 8e-87 42
irp5 YP_001006819.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 1e-86 42
ybtE AAA93464.1 yersiniabactin 2,3-dihydoxybenzoate-AMP ligase Virulence HPI Protein 1e-87 41
ybtE YP_853079.1 yersiniabactin siderophore biosynthetic protein Virulence PAI IV APEC-O1 Protein 2e-87 41
irp5 YP_002346898.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 2e-87 41
ybtE NP_669710.1 salicyl-AMP ligase Virulence HPI Protein 2e-87 41
ybtE NP_993003.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 2e-87 41
ybtE YP_070120.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 2e-87 41
ybtE CAA21394.1 - Virulence HPI Protein 2e-87 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_004940 YP_006645150.1 peptide arylation protein VFG0932 Protein 1e-166 64
PCC21_004940 YP_006645150.1 peptide arylation protein VFG0168 Protein 1e-111 46
PCC21_004940 YP_006645150.1 peptide arylation protein VFG1817 Protein 9e-90 42