Gene Information

Name : PCC21_042560 (PCC21_042560)
Accession : YP_006648912.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4830135 - 4830788 bp
Length : 654 bp
Strand : -
Note : -

DNA sequence : 
TTGTTAATCGAAGACGATCGCTTGATTGGCGACGGCCTGAAAGCGGGGCTGAACAAACTGGGCTTTAATATCGACTGGTT
TATGGAAGGTAAAGCAGGTGCAGCGGCATTGAAGGCGGCCCCCTATGATGCGGTGGTGCTCGATCTCAGCCTGCCGGGTA
TGGACGGGATGGATATTCTGCGCCAGTGGCGTCAGGCGGGCCATGACGAACCGGTACTGATTTTGACCGCCCGCGATGCG
CTGGAACAACGAGTGGAAGGGCTACAACGAGGTGCCGATGATTATTTATGTAAGCCCTTTGCGCTGACAGAAGTGGCCGC
TCGCCTGCAGGCACTGATTCGCCGCCGTCACGGTCAGCTTCAACCGGCATTAACGCACGGTGCAGTTTCCCTTGAGCAGG
GATCGCGGAGCGTCACGCTTAACAACGAACCGCTAATACTAAAATCTCGCGAACTGGCGTTACTGGAACTGTTTTTGCTC
AATCCGAACCGCATACTCACGCGCGCACAGTTGGAAGAAAAGCTCTATGGGTGGGACGATGATGTCTCCAGTAATGCGGT
AGAAGTACATATCCATCATCTGCGTAAAAAGCTGGGCAGCGGGTTTATCCGTACCGTGCATGGCGTTGGCTATATTCTGG
GAGATGCGCCATGA

Protein sequence : 
MLIEDDRLIGDGLKAGLNKLGFNIDWFMEGKAGAAALKAAPYDAVVLDLSLPGMDGMDILRQWRQAGHDEPVLILTARDA
LEQRVEGLQRGADDYLCKPFALTEVAARLQALIRRRHGQLQPALTHGAVSLEQGSRSVTLNNEPLILKSRELALLELFLL
NPNRILTRAQLEEKLYGWDDDVSSNAVEVHIHHLRKKLGSGFIRTVHGVGYILGDAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-32 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_042560 YP_006648912.1 winged helix family two component transcriptional regulator BAC0487 Protein 5e-33 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_042560 YP_006648912.1 winged helix family two component transcriptional regulator VFG0473 Protein 2e-28 42