Gene Information

Name : PCC21_004050 (PCC21_004050)
Accession : YP_006645061.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 448992 - 450245 bp
Length : 1254 bp
Strand : +
Note : -

DNA sequence :
ATGAAGCTCAACGCCCGCCAAGTCGAGACTGCCAAGCCAAAAGAGAAAACTTATAAAATGGCGGACGGTGGCGACCTGTA
TCTTGAGATCACCACGCGGGGATCGAAATACTGGCGGATGAAGTACCGCCGCCCAATCGATAAGAAAGAGGACAGGTTAG
CTTTTGGCGTATGGCCGACGGTTACCCTTGCCGATGCTCGCGCTAAACGTGATGAAGCCAAAAAGTTGCTGGTTCAAGGC
ATTGATCCTAAAGCCGAGCAAAAAGAAGTACAGGCAGAATCCGAGGGGGCATATACCTTTGAAACGGTCGCGCGCCAGCA
ACAAGCGCTGGGGGATTACCATCGATCGCGGGTTATCCGGTATTTGGAAATGTATATTTCCCCCGAAATCGGTGCATCTG
ATATTCGTAAGCTGAAAACCAGCCACCTTTTGGCACCGATCAAAGCCGTGGATGCATCGGGCAAGCATGACGTTGCTCAA
CGGCTGCAACAGCGTATTACGGCTATTATGCGTTACGCTGTCCAGAATGATTACATCGAGTCTAATCCTGCTGGCGATAT
GGCTGGAGCGCTGACTACGACCAAAGCCCGTCACTATCCCGCTTTACCTTCCGTTCGGTTCCCTGAGTTTCTTTCGCGTC
TGGCGGCCTACCGTGGTCGATTACTTACCCGCTGCGCGGTGGAATTAATGCTGCTGACGTTTGTCCGTTCTAGTGAACTG
CGTTTCGCTCAGTGGCGTGAATTTGATTTTGATAGTGCTGAATGGCGTATTCCCGCACAACGAGAAGAAATTGAAGGTGT
GAGATATTCCTATCGTGGCATGAAAATGAAAGAAGAGCATGTTGTGCCGCTGAGCAATCAGGCGCTTGCTGTGTTGGCAA
AATTACATGCTTTGAGCGGTGACAATCCCCGGCTTTTCCCAAGCGATCATAACCCTGAAAAGGTGATGAGCGAAAACACG
GTCAATAGCGCGCTGCGTACTATGGGTTATGACACCAAGACGGAAGTGTGTGGCCACGGTTTCAGAACGATAGCGCGTGG
TGCACTGGGTGAGTCTGGCCTGTGGAGTGATGACGCGATAGAACGCCAGCTAAGCCACTCTGAACGCAATAATGTGCGCG
CGGCATACATTCACACGTCTGAGTATCTGGACGAGCGCCGGTTGATGGTGCAATGGTGGGCTGATTATCTTGATATTATT
CAATATGAGCATATTACACCTTATGAATATGCAAGAGTCCGCAACATCAAATGA

Protein sequence :
MKLNARQVETAKPKEKTYKMADGGDLYLEITTRGSKYWRMKYRRPIDKKEDRLAFGVWPTVTLADARAKRDEAKKLLVQG
IDPKAEQKEVQAESEGAYTFETVARQQQALGDYHRSRVIRYLEMYISPEIGASDIRKLKTSHLLAPIKAVDASGKHDVAQ
RLQQRITAIMRYAVQNDYIESNPAGDMAGALTTTKARHYPALPSVRFPEFLSRLAAYRGRLLTRCAVELMLLTFVRSSEL
RFAQWREFDFDSAEWRIPAQREEIEGVRYSYRGMKMKEEHVVPLSNQALAVLAKLHALSGDNPRLFPSDHNPEKVMSENT
VNSALRTMGYDTKTEVCGHGFRTIARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEYLDERRLMVQWWADYLDII
QYEHITPYEYARVRNIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-161 84
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 6e-91 54
int AAK00456.1 Int Not tested SHI-1 Protein 2e-90 53
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-97 53
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-97 52
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 5e-97 52
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-97 52
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-97 52
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 3e-97 52
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 6e-97 52
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-97 52
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 8e-96 52
int AAK16198.1 Int Not tested PAI-I AL862 Protein 4e-97 52
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 8e-96 52
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 1e-96 52
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 4e-97 52
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-96 52
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 1e-96 52
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-96 52
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 8e-97 52
int AAL51028.1 CP4-like integrase Not tested LEE Protein 8e-97 52
int CAC81896.1 integrase Not tested LEE II Protein 6e-90 52
int-phe AAL60261.1 Int-phe Not tested LEE Protein 8e-97 52
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 4e-74 52
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-96 51
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 5e-96 51
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 1e-89 50
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 1e-89 50
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 6e-63 48
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 7e-78 47
int CAB59974.1 integrase Not tested HPI Protein 7e-80 46
int CAA08754.1 integrase Not tested HPI Protein 2e-80 46
int YP_002346908.1 integrase Not tested HPI Protein 8e-80 45
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 8e-80 45
int2 NP_993013.1 integrase Not tested HPI Protein 8e-80 45
int CAA21384.1 - Not tested HPI Protein 8e-80 45
unnamed AAD17660.1 unknown Not tested HPI Protein 2e-77 44
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-59 42
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-59 41
int ACU09430.1 integrase Not tested LEE Protein 5e-59 41
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 7e-59 41
ECs4534 NP_312561.1 integrase Not tested LEE Protein 7e-59 41
aec33 AAW51716.1 Int Not tested AGI-3 Protein 4e-59 41
int CAC39282.1 integrase Not tested LPA Protein 4e-59 41
int AAD44730.1 Int Not tested SHI-2 Protein 5e-59 41
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-58 41
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-58 41
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-58 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_004050 YP_006645061.1 integrase VFG1536 Protein 4e-91 54
PCC21_004050 YP_006645061.1 integrase VFG0626 Protein 1e-97 52
PCC21_004050 YP_006645061.1 integrase VFG1693 Protein 9e-98 52
PCC21_004050 YP_006645061.1 integrase VFG0783 Protein 3e-59 41
PCC21_004050 YP_006645061.1 integrase VFG0598 Protein 1e-58 41