Gene Information

Name : PCC21_040350 (PCC21_040350)
Accession : YP_006648691.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Resistance
Product : O-succinylhomoserine (thiol)-lyase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4581333 - 4582493 bp
Length : 1161 bp
Strand : -
Note : -

DNA sequence :
ATGACGCGTAAACAGGCAACGATCGCAGTCCGCAGCGGGTTAAATGATGATGAGCAGTATGGCTGCGTCGTCCCACCCAT
TCACCTTTCCAGCACGTATAACTTTACCGGATTCAACCAGCCACGCGCACACGACTATTCGCGTCGCGGTAACCCCACGC
GTGATGTTGTGCAGCGTGCGCTTGCCGAACTGGAAGGCGGTGCGGGTGCGGTAATGACGAGCAGCGGAATGTCGGCGATT
ATGCTGGTTTGTACGGTGTTCCTGCGTCCCGGCGATCTGCTGGTGGCGCCGCATGATTGCTACGGCGGCAGCTATCGTCT
GTTTGACAGCCTGAGCAAGCGCGGCGCATTTCGCGTCAAATTTGTCGATCAAAGTGATACCGATGCGCTCAACGCGGCGT
TGGCAGAAAAGCCGAAGCTGGTGCTGGTGGAAAGCCCGAGCAATCCGCTGCTGCGCGTCGTGGATATTGCCGCGATTTGT
CAGGCCGCGCGGGAAGCGGGCGCGGTCAGCGTGGTGGATAACACCTTCCTGAGCCCGGCGCTGCAGAAGCCGCTGGAGCT
GGGTGCCGATCTGGTGGTGCATTCGTGTACCAAGTACCTGAATGGTCACTCTGACGTAGTGGCGGGTGCAGTGATCGCCA
GAGATGCCGATACCATTACTGAACTGGCCTGGTGGGCAAACAACATCGGCGTCACAGGCGCGGCGTTTGACAGCTATCTG
CTGCTACGTGGCCTGCGTACTCTGGCACCTCGCATAGCAGCCGCGCAGCGTAATGCGCAACAAATCGTTGAATTCTTACA
GACGCAGCCGTTGGTGAAGGCGCTGTACCATCCTTCACTGCCGAACAATCCCGGCCATGATATTGCCCGCCGTCAACAAT
CCGGCTTTGGCGCTATGCTAAGTTTTGAGCTGGATGGAGATGAAGACACGCTACGCCGTTTTCTGGCCTCGCTGGAGCTG
TTCACACTGGCGGAATCGCTGGGCGGAGTCGAAAGCCTCATCTCTCATGCGGCAACGATGACGCATGCTGGCATGGCGCC
AGAAGCGCGTGCCGCGGCGGGTATCTCTGAAACATTACTGCGTATTTCCACCGGCATTGAAGACGGCGATGATCTGGTTG
CCGATCTGGATCGTGCGTTTCAAGCCGCAGCCAAGAGGTAA

Protein sequence :
MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNQPRAHDYSRRGNPTRDVVQRALAELEGGAGAVMTSSGMSAI
MLVCTVFLRPGDLLVAPHDCYGGSYRLFDSLSKRGAFRVKFVDQSDTDALNAALAEKPKLVLVESPSNPLLRVVDIAAIC
QAAREAGAVSVVDNTFLSPALQKPLELGADLVVHSCTKYLNGHSDVVAGAVIARDADTITELAWWANNIGVTGAAFDSYL
LLRGLRTLAPRIAAAQRNAQQIVEFLQTQPLVKALYHPSLPNNPGHDIARRQQSGFGAMLSFELDGDEDTLRRFLASLEL
FTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGDDLVADLDRAFQAAAKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 5e-56 42
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 2e-54 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_040350 YP_006648691.1 O-succinylhomoserine (thiol)-lyase BAC0207 Protein 3e-47 41