Gene Information

Name : PCC21_038240 (PCC21_038240)
Accession : YP_006648480.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator BasR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4329377 - 4330045 bp
Length : 669 bp
Strand : +
Note : -

DNA sequence : 
ATGAAATTATTGATTGTTGAAGACGATAAGCTGTTGCAGGAAGGGTTATTATTGGCGTTGAGTCATGAAGGTTATGCCTG
CGATTGCGCAGGCACAGCCAAAGAAGCGGACGCGCTCATTGGCAGCGCGCATTACAGTCTGGTTATTCTCGATCTTGGCT
TACCGGATGAAGACGGACTCACCCTGCTCTCACGCTGGCGTAAAAATCATTACCAGCATCCCGTACTCATCTTAACGGCA
CGGGATAAGGTAAACGATCGCGTCAGCGGGCTGGATGTCGGCGCAGACGATTACCTTGCCAAGCCCTTCGCACTGACGGA
ATTACAGGCGCGCGTACGCGCGCTGATTCGCCGCCATCAGGGTTCAAGTAATAGCACAATACAGGTCGACAACATTACGT
TGGACTTAAACAATCAACAGGTATTACTGGACGACAAGCCAGTGGTGCTGACGCCAAAAGAGTTTGCGATCCTGTCCCGT
CTGGTGTTGAAAGCCGGTTCTCAGGTACATCGCGAGGTCCTGCATCAGGATATCTACGCCTGGAACGACGACCCGTCCTC
CAATTCGCTGGAAGTGCATATCCACAATCTGCGTCACAAGATAGGGAAAGACCGCATCCGAACCCTGCGAGGTTTTGGCT
ATCTGCTGACTAAAGGTGAACAGCCATGA

Protein sequence : 
MKLLIVEDDKLLQEGLLLALSHEGYACDCAGTAKEADALIGSAHYSLVILDLGLPDEDGLTLLSRWRKNHYQHPVLILTA
RDKVNDRVSGLDVGADDYLAKPFALTELQARVRALIRRHQGSSNSTIQVDNITLDLNNQQVLLDDKPVVLTPKEFAILSR
LVLKAGSQVHREVLHQDIYAWNDDPSSNSLEVHIHNLRHKIGKDRIRTLRGFGYLLTKGEQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-33 43
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_038240 YP_006648480.1 DNA-binding transcriptional regulator BasR BAC0487 Protein 3e-85 96
PCC21_038240 YP_006648480.1 DNA-binding transcriptional regulator BasR NC_002516.2.879194.p Protein 4e-27 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_038240 YP_006648480.1 DNA-binding transcriptional regulator BasR VFG0473 Protein 1e-64 62
PCC21_038240 YP_006648480.1 DNA-binding transcriptional regulator BasR VFG0596 Protein 8e-28 41