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Name : PCC21_035700 (PCC21_035700) Accession : YP_006648226.1 Strain : Pectobacterium carotovorum PCC21 Genome accession: NC_018525 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : - COG ID : - EC number : - Position : 4060920 - 4062416 bp Length : 1497 bp Strand : + Note : - DNA sequence : ATGACAGACTCCTCCTTCTCCTCCGAGCATACGCTCAGCGAGTTACAGACGCTGTGCCGACGTTATCAGGCATTGTTGCT CAGTCTCGATGAACAAACGCTGTCGGTCGCCGTCACGGCCTCCCCTTCTGCGGAGATGATTGCCGCGCTGCGTTTCGCCA GCAATCGCCGCATTATGGTGGAACAGTGGCCACAAACCAGAATGGAACAGCAGCTTAACCCGGTGAACGCCGTTGCCGAG CCCGCAGAAACCTACCATGCAGGCACTTATGCCAACACTCATAACAATATTCATAACAACAGCACCGGGCTGCAGGATCA TGACGATGACTCCCCTGTTGCACAATTTATCCATCAAACACTACGTCTCGCTGTTCAGCGGCGCGCCTCTGATATCCACT TTGAGCCATTACTGGACAGCTATCGCGTACGCCTACGCATTGACGGCGTGCTACAGGCCATATCCGCACCGCCGCCCGAA CTGACAAACCGTATTACCGCGCGGCTGAAAATCATGGGTAAATTGAACATCGCCGAACGGCGACTGCCGCAGGACGGCCA ATTCAGCCTGACGCTGGATCAACAAGCCTACTCATTACGCATCGCTACGCTGCCCGTACAACAAGGCGAAAAAGTCGTAC TGCGTATTCTGCAAACGCACCAGCAGGAGCTAGCACTGGATAAACTCGGGCTCAGCGCAAAGGCGTTACAGCAGGTGATT AGCGTACTAAGCGCCTCACAGGGAATGCTGTTAGTCACTGGCCCGACAGGTAGTGGAAAAACCGTCACGCTTTACAGCGC GATACGTTGGCTAAACGAGTGCAGCCGCAATATCTGTAGCGTGGAAGATCCTGTCGAAATCCCCTTGCAGGGCATAAACC AAACGGCAATCAATCCCAAAGCCGAACTGGGCTTCGGCCGAATTTTACGAGCGCTGCTGCGACAGGATCCAGACGTCATT ATGATCGGTGAAATCCGTGACGCTGAAACCGCAGAAATTGCGGTAAAAGCCGCACAAACCGGCCATCTGGTCATGTCCAC GCTGCATACCAACTCTGCCGTAGAAACGTTAACTCGCCTCAGCCATCTGGGCATCCCCGGTTACCTGTTAGCTGCGGCGC TAAAACTCATCATTGCCCAACGCCTTGTTCGTCGGTTATGCCCGCACTGTAAAATCCCAGGAGAACCGCTACTTTCACTA CCCAATGACGTATGGCAAGGGCCACTGCAACATTGGCAAGCCCGCGGCTGTAGCCACTGTTTTTCTGGCTACTATGGTCG CGTCGCGCTCTATGAATTGTTGCCTATCACGCCAGATTTTCAGGCAGCGCTAGCGGGCAACGCCAGCACAGGGGAATTAT CTGCACTCTCTCGCCATGCCGGTTTTCCAACGTTACTGACTGCAGGGCTTGAGTTGGTCAACGACGGCCTGACCTCACTT GTTGAAGTCTACCGGATGGTGGGCGATGAGCGGTCAATGAATCAGGAGGCGAAATGA Protein sequence : MTDSSFSSEHTLSELQTLCRRYQALLLSLDEQTLSVAVTASPSAEMIAALRFASNRRIMVEQWPQTRMEQQLNPVNAVAE PAETYHAGTYANTHNNIHNNSTGLQDHDDDSPVAQFIHQTLRLAVQRRASDIHFEPLLDSYRVRLRIDGVLQAISAPPPE LTNRITARLKIMGKLNIAERRLPQDGQFSLTLDQQAYSLRIATLPVQQGEKVVLRILQTHQQELALDKLGLSAKALQQVI SVLSASQGMLLVTGPTGSGKTVTLYSAIRWLNECSRNICSVEDPVEIPLQGINQTAINPKAELGFGRILRALLRQDPDVI MIGEIRDAETAEIAVKAAQTGHLVMSTLHTNSAVETLTRLSHLGIPGYLLAAALKLIIAQRLVRRLCPHCKIPGEPLLSL PNDVWQGPLQHWQARGCSHCFSGYYGRVALYELLPITPDFQAALAGNASTGELSALSRHAGFPTLLTAGLELVNDGLTSL VEVYRMVGDERSMNQEAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 7e-68 | 42 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-68 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PCC21_035700 | YP_006648226.1 | type II secretion system protein E | VFG2426 | Protein | 1e-77 | 47 |
| PCC21_035700 | YP_006648226.1 | type II secretion system protein E | VFG0112 | Protein | 5e-86 | 47 |
| PCC21_035700 | YP_006648226.1 | type II secretion system protein E | VFG2048 | Protein | 4e-69 | 44 |
| PCC21_035700 | YP_006648226.1 | type II secretion system protein E | VFG0182 | Protein | 7e-74 | 44 |
| PCC21_035700 | YP_006648226.1 | type II secretion system protein E | VFG1876 | Protein | 1e-73 | 43 |
