Gene Information

Name : PCC21_032660 (PCC21_032660)
Accession : YP_006647922.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : GTP-binding protein HSR1-like protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3701099 - 3701974 bp
Length : 876 bp
Strand : -
Note : -

DNA sequence :
ATGCCCAACCACGAGAACCTACACGAGATACAGGCGTCGCTATCAGTATTGCCGGGTAGCCTGCACCAGCGCGTCATTGA
CCACATTGAACAACTGATCCAATACGAACCCGTCATCGGCATTATGGGTAAAACCGGTGTAGGTAAATCCAGTCTGTGTA
ATGCACTGTTTCAGGGCGAGGTATCCCCGGTCAGTGATAATCGCGCCTGCACCCGGCACGCTCTTACGTTCCGGCTGTCA
TCAGGACAACGCAGCATTCTGTTTGTTGATTTACCCGGTGTCGGTGAGAGTGAGGATAGGGATCGTGACTATGCTGCGCT
CTATCAGCATTGGTTGCCCCGCGTTGATATTGTCCTCTGGCTGCTCAAGGCCGATGACCGGGCGCTTGCCATTGACCAGC
ATATCTATCGCACCGTTATCGGTGAGCACTACCGTGACAAAGTACTGTTTGTCCTGAATCAGGTCGACAAGCTGGAGCCC
AGTCACGAATGGGACTGGGAGTCACAGCAACCCTCACTCAAGCAGTCCGGCAATATCTATGCTCGTCGCGTCGCAGTGCG
TTCCACCTTCTTTCCTACCCATCCGGTCTGCGCCGTGTCGGTAAAAACTGGCTGGGGCATGGCAGCAATGGTGGAGATGC
TGTTTCAATGTTTACCGCCTAAGGCCAGTAGTCCGCTGTCAGCACGCTTACAGCCCAACTGGCGGTCAGTGGCTATTGAG
AGCCGGGCTCAGGATGATTTTGCCCAGTCGGTCGGCGACGTACTTGATAGCGTGATTGCGTTACCTGCCGTCCCCGCACC
ACTAAAAATGCTTATCGGCGGCCTCAAACAAACCGTGTTGTCACTCGCCCGTTCATTGTGGTCACTGCTGTTCTAG

Protein sequence :
MPNHENLHEIQASLSVLPGSLHQRVIDHIEQLIQYEPVIGIMGKTGVGKSSLCNALFQGEVSPVSDNRACTRHALTFRLS
SGQRSILFVDLPGVGESEDRDRDYAALYQHWLPRVDIVLWLLKADDRALAIDQHIYRTVIGEHYRDKVLFVLNQVDKLEP
SHEWDWESQQPSLKQSGNIYARRVAVRSTFFPTHPVCAVSVKTGWGMAAMVEMLFQCLPPKASSPLSARLQPNWRSVAIE
SRAQDDFAQSVGDVLDSVIALPAVPAPLKMLIGGLKQTVLSLARSLWSLLF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sap NP_838477.1 hypothetical protein Not tested SHI-1 Protein 7e-57 47
ECO103_3582 YP_003223441.1 hypothetical protein Not tested LEE Protein 1e-57 46
unnamed AAK00473.1 unknown Not tested SHI-1 Protein 2e-56 46
unnamed AAL99256.1 unknown Not tested LEE Protein 1e-56 46
Z1210 NP_286745.1 histone Not tested TAI Protein 4e-55 46
unnamed CAD66199.1 hypothetical protein Not tested PAI III 536 Protein 5e-57 46
Z1650 NP_287153.1 hypothetical protein Not tested TAI Protein 4e-55 46
sap NP_708764.1 hypothetical protein Not tested SHI-1 Protein 2e-56 46
unnamed AAL08471.1 unknown Not tested SRL Protein 1e-57 46
aec64 AAW51747.1 Aec64 Not tested AGI-3 Protein 3e-57 46
yeeP ADD91709.1 YeeP Not tested PAI-I AL862 Protein 3e-57 46
yeeP CAE85196.1 YeeP protein Not tested PAI V 536 Protein 9e-57 46
APECO1_1093 YP_853113.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 2e-55 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_032660 YP_006647922.1 GTP-binding protein HSR1-like protein VFG1674 Protein 3e-57 46
PCC21_032660 YP_006647922.1 GTP-binding protein HSR1-like protein VFG0654 Protein 9e-57 46
PCC21_032660 YP_006647922.1 GTP-binding protein HSR1-like protein VFG1062 Protein 8e-58 46