Gene Information

Name : PCC21_032650 (PCC21_032650)
Accession : YP_006647921.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : regulatory protein DeoR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3700031 - 3700729 bp
Length : 699 bp
Strand : -
Note : -

DNA sequence : 
ATGACACAGGCTGACCGCCGATATGACCGGCTGGCCGTCAGGCTGTCATTGATAATCAGCCGATTACTGGCGGGCGAAAC
GCTGAGCGTCAGAAAACTGGCGACAGAGTTCGGCGTCTCGACCCGTACCTTGCGACGGGACTTCCGTGAACGGCTGATGT
ATCTCGATTTGGAATACCGTAACGGCCTTTGCCGTTTGCCGGAGCACCACAACCCGGCACGGCATGAGCAGGATGTGTTG
ATGTTTGCCCGCCAGACTGGCGTAGGTGTGTTCTTTCCCGGTCTGGATAACCGGTTGGTAAACACCCTGCTGGACAGCGG
TGAGGACGCCCCTTGTCTGGTCTGGCATCCGCCCTTGCGTGGTACGCCGACACTGCCGGGGCATTTTTACCGCCTGACCC
GGGCAATTGGTGAGCAGCTACGTGTCACGGTTTTGGCCGACAGTCAGCGCTATGACGGGTTATCGCCTTACCGGCTTATC
TGCCTGTACGGAGAATGGTATCTGGTGGCCGAATCGCTGGGGCATCTTCTGGTCCTGCCGCTGCATGAGATTCACGGTGT
GACGGTGTCCACCGAGTCATTCCAGCGCCGCGATGATATCTGCCACCTGACCACGCAATCCGGCTTCATCACGGCATTGC
CGCATTTTCGCTTTATTCACGACGTTCTGACCACCTTCGGCACGTCTCCGACCACATAA

Protein sequence : 
MTQADRRYDRLAVRLSLIISRLLAGETLSVRKLATEFGVSTRTLRRDFRERLMYLDLEYRNGLCRLPEHHNPARHEQDVL
MFARQTGVGVFFPGLDNRLVNTLLDSGEDAPCLVWHPPLRGTPTLPGHFYRLTRAIGEQLRVTVLADSQRYDGLSPYRLI
CLYGEWYLVAESLGHLLVLPLHEIHGVTVSTESFQRRDDICHLTTQSGFITALPHFRFIHDVLTTFGTSPTT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c5160 NP_757008.1 transcriptional regulator YfjR Not tested PAI II CFT073 Protein 4e-46 45
APECO1_3492 YP_854319.1 transcriptional regulator Not tested PAI I APEC-O1 Protein 2e-46 45
unnamed CAD33782.1 hypothetical protein Not tested PAI I 536 Protein 6e-46 45
unnamed CAD42094.1 hypothetical protein Not tested PAI II 536 Protein 2e-46 45
yfjR AAZ04453.1 transcriptional regulator Not tested PAI I APEC-O1 Protein 1e-46 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_032650 YP_006647921.1 regulatory protein DeoR VFG1523 Protein 4e-46 45
PCC21_032650 YP_006647921.1 regulatory protein DeoR VFG1613 Protein 1e-46 45