Gene Information

Name : PCC21_032600 (PCC21_032600)
Accession : YP_006647916.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3697584 - 3697919 bp
Length : 336 bp
Strand : -
Note : -

DNA sequence :
ATGTCATCAATAGAGGCCCCGGAATGGGGATTAAAGTGTGCTGTCACGCCGCGATTCGGAGCCAGACTGGTTCAGGAAGG
TCACTATCTTCATTATCTGTCAGATCGGGCCAGCATTGTCGGTACGTTCAGCAAAACAGAAGCCCGTAATCTGGAGCAGA
CCTTTCCTGAGCTGATTAAGCAGTTGGAACAAAAACTGTGCTCGGGTGAGTTGAATCCCCGCCAGCAGGGCTGCATCACG
CTGCATTGCAACGAATGGACCTGTGAAGCCGATACGCTGGGCAGTTTTGGCTATGTGTATATTGTTATTTATCTGACCTC
TGCTGCAACACACTAA

Protein sequence :
MSSIEAPEWGLKCAVTPRFGARLVQEGHYLHYLSDRASIVGTFSKTEARNLEQTFPELIKQLEQKLCSGELNPRQQGCIT
LHCNEWTCEADTLGSFGYVYIVIYLTSAATH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
yeeU AAZ04460.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 3e-25 65
yeeU YP_854324.1 hypothetical protein Not tested PAI I APEC-O1 Protein 5e-25 65
ECO103_3591 YP_003223448.1 hypothetical protein Not tested LEE Protein 2e-24 63
yeeU NP_838486.1 structural protein Not tested SHI-1 Protein 9e-25 63
yeeU NP_708772.1 structural protein Not tested SHI-1 Protein 9e-25 63
unnamed AAK00481.1 unknown Not tested SHI-1 Protein 6e-25 63
yeeU ADD91700.1 YeeU Not tested PAI-I AL862 Protein 7e-24 62
yeeU CAD42100.1 hypothetical protein Not tested PAI II 536 Protein 1e-24 62
Z1220 NP_286755.1 structural protein Not tested TAI Protein 5e-24 62
Z1658 NP_287161.1 structural protein Not tested TAI Protein 5e-24 62
aec75 AAW51758.1 Aec75 Not tested AGI-3 Protein 3e-24 61
unnamed CAD66206.1 hypothetical protein Not tested PAI III 536 Protein 1e-24 61
c5150 NP_756998.1 hypothetical protein Not tested PAI II CFT073 Protein 4e-23 61
yeeU CAE85203.1 YeeU protein Not tested PAI V 536 Protein 2e-24 61
yeeU YP_853121.1 antitoxin of the YeeV-YeeU toxin-antitoxin system Virulence PAI IV APEC-O1 Protein 1e-23 60
unnamed AAL08477.1 unknown Not tested SRL Protein 3e-23 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_032600 YP_006647916.1 hypothetical protein VFG0662 Protein 3e-25 63
PCC21_032600 YP_006647916.1 hypothetical protein VFG1619 Protein 5e-25 62
PCC21_032600 YP_006647916.1 hypothetical protein VFG1681 Protein 4e-25 61
PCC21_032600 YP_006647916.1 hypothetical protein VFG1068 Protein 1e-23 60