Gene Information

Name : PCC21_032580 (PCC21_032580)
Accession : YP_006647914.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3696243 - 3697076 bp
Length : 834 bp
Strand : -
Note : -

DNA sequence :
ATGCAAATTGAACCCGAGGTTTTGACCGAACACACTGAGCTGATTTGCTCGACCAATATCGAACGTATCGTCACCGGACG
TGATACCGCGCTGCAACAGATAGAGCAACTCCTCAATCAGCTAGGGGCGATCTCAACGCTAACGGCGACTGTCGGTGGCG
GCACTGCCGAAGATTGGGGGCTGAAGCAAGGACATCGCTACGATTGCTGGCTAACGGAAACGCCTGACAAGGCGATGCCC
GCCATCACCCGCACACTGGATCGCAATATCTGGCGCGACCTGATGCTGAAATCCGGCATGCTGTCGCTGATGGATGCCGA
AGCGCGTAGCCAGTGGCATAAAAATCTGGATGAGGGGGAGCTACCGACTATCAGCGAAGCCAATATTCTCAGCACCTTTG
AGCAACTTCACCAGAGCAAGCAGGAGGTATTTGAGCGAGGTGTGATTAACGTATTCAAAGGGCTATCGTGGGATTACAAG
ACCAATCACCCTTGTTACTTCGGCAAGAAAATCATCATCAGCAATTTGGTGACCTACAACCGTTGGGGCTTTGGTCTGAA
CTGGGGCTGGCGACGCGATCAACTGGCCGATCTGGAACGTATGCTGTATCTGTTGGATGGCAAACCGATCCCCGACAACC
GGGGCGATGTCACCATCCGGCTGATGGACCATATCCGCGATAATCCTCACAAGCAGGAATACGAGGATGAGTTCTTCAGT
GTGCGTTACTTTCAGAAAGGCACGGGGCATCTCACCTTTAAACGCCCCGACTTGATCGATCAGATGAACGACATTATTGC
CAAACATTATCCGGGGGTGTTGGCCGAACGGTAG

Protein sequence :
MQIEPEVLTEHTELICSTNIERIVTGRDTALQQIEQLLNQLGAISTLTATVGGGTAEDWGLKQGHRYDCWLTETPDKAMP
AITRTLDRNIWRDLMLKSGMLSLMDAEARSQWHKNLDEGELPTISEANILSTFEQLHQSKQEVFERGVINVFKGLSWDYK
TNHPCYFGKKIIISNLVTYNRWGFGLNWGWRRDQLADLERMLYLLDGKPIPDNRGDVTIRLMDHIRDNPHKQEYEDEFFS
VRYFQKGTGHLTFKRPDLIDQMNDIIAKHYPGVLAER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_3484 YP_854327.1 hypothetical protein Not tested PAI I APEC-O1 Protein 1e-84 64
ORF_49 AAZ04463.1 hypothetical protein Not tested PAI I APEC-O1 Protein 8e-85 64
z1226 CAD33792.1 Z1226 protein Not tested PAI I 536 Protein 4e-84 63
aec79 AAW51762.1 Aec79 Not tested AGI-3 Protein 1e-84 62
unnamed AAL57572.1 unknown Not tested LEE Protein 8e-85 62
Z1226 NP_286760.1 hypothetical protein Not tested TAI Protein 8e-86 62
Z1664 NP_287166.1 hypothetical protein Not tested TAI Protein 8e-86 62
unnamed CAI43906.1 hypothetical protein Not tested LEE Protein 7e-85 62
unnamed CAE85207.1 hypothetical protein Not tested PAI V 536 Protein 3e-84 61
unnamed AAK00485.1 unknown Not tested SHI-1 Protein 3e-82 60
ECO103_3595 YP_003223452.1 hypothetical protein Not tested LEE Protein 9e-82 60
S3207 NP_838489.1 hypothetical protein Not tested SHI-1 Protein 4e-82 60
SF3002 NP_708776.1 hypothetical protein Not tested SHI-1 Protein 4e-82 60
ECO111_3781 YP_003236116.1 hypothetical protein Not tested LEE Protein 6e-83 60
unnamed CAD66210.1 hypothetical protein Not tested PAI III 536 Protein 1e-74 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_032580 YP_006647914.1 hypothetical protein VFG1533 Protein 2e-84 63
PCC21_032580 YP_006647914.1 hypothetical protein VFG0666 Protein 2e-82 60
PCC21_032580 YP_006647914.1 hypothetical protein VFG1685 Protein 6e-75 57