Gene Information

Name : PCC21_032410 (PCC21_032410)
Accession : YP_006647897.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3668938 - 3670416 bp
Length : 1479 bp
Strand : -
Note : -

DNA sequence :
ATGTCAATAGTTGAAGAACAGGTTCAGGCAGGAGCCGCCAGTGCTTCTGGATCGCTGCTTGATGACATCATGGCTCAAGC
GCGTATCAGCCCGGTTGATGAAGGCTACAGTGTTGCTAAACAGGGCATTGCCGCGCTGGTCGCTAACATTCTTGATAGCG
GTAATGCAGCAGAACCCGTGAACAAAGCGCTGGTCGATAGCATGATCGTCGAACTGGACAAAAAGCTCAGCAAGCAGATT
GACGTTATTCTGCATGCGAAAGAATTACAGGAACTGGAATCTTCCTGGCGTTCAATGAAACTGCTGGTTGATCGCACCGA
TTTCCGCGAAAACATCAAACTGTTGGTGTTGCATGCGACGAAAGAAGAGCTGTTGGAAGATTTCGAATTCGCCCCTGAAA
TCTCACAGTCTGGCTTCTATAAGCACGTGTATTCCAGCGGCTACGGCCAGTTTGGTGGTCAGCCTATCGGTGGCGTAATC
GGTGACTATGCGCTGACGCAAAGTTCACCAGATATCAAGCTGATGCAGTATGTCAGCGCCGTGGGTGCGATGGCGCATGC
GCCGTTCATCTCGTCCGTTGCGCCGACCTTCTTTGGCGTGGATCGCTTCACCGATCTGCCTTCCATCAAAGATCTGAAAT
CCGTTTTCGAAGGCCCAGCCTACACGAAATGGCGTTCGCTGCGTGAGTCCGAAGATGGTCGCTATCTGGGGCTGACGGCA
CCGCGCTTCCTGGCTCGCCTGCCTTATGACCCGGTAGAGAACCCGATTAAGGGCTTCAACTACAAGGAAGATATCAGCAC
CGATCACGAACACTATCTGTGGGGCAATACCGCCTATCTGATGGGAACGGCGTTGACCGACAGCTTCGCGAAATACCGCT
GGTGTCCGAATATCATTGGCCCGCAGAGCGGCGGTGCGATTACCGACCTGCCCGTGCATGTGTATGAAGCCATGGGCCAA
CTTCAGGCCAAGATCCCGACTGAAGTCCTGATCACCGATCGTCGCGAATACGAAATGGCTGAAGAAGGCTTTATCACGCT
GACGATGCGTAAAGACAGTGACAACGCGGCGTTCTTCTCGGCTAACTCGGTGCAGAAGCCGAAGGTGTTCCCAAACACCA
AAGAAGGTAAAGAAGCGGAAACCAACTACAAGCTGGGTACGCAACTGCCGTACATGTTCATCATCAACCGTCTGGCGCAC
TACATCAAAGTGCTGCAGCGTGAACAGATTGGCTCATGGAAAGAGCGTCAGGATCTTGAGCGTGAGTTGAATACCTGGAT
TAAACAGTACATCGCCGATCAGGAAAACCCGCCGGCAGATGTTCGTAGCCGTCGCCCTCTGCGTGCCGCACAAATCAAAG
TGCTGGATGTAGAAGGGGAACCTGGTTGGTATCAGGTCACCATGTCTGTGCGCCCGCACTTCAAGTACATGGGGGCGAAC
TTTGAGCTGTCGCTGGTAGGGCGTTTGGATAAGGAATAA

Protein sequence :
MSIVEEQVQAGAASASGSLLDDIMAQARISPVDEGYSVAKQGIAALVANILDSGNAAEPVNKALVDSMIVELDKKLSKQI
DVILHAKELQELESSWRSMKLLVDRTDFRENIKLLVLHATKEELLEDFEFAPEISQSGFYKHVYSSGYGQFGGQPIGGVI
GDYALTQSSPDIKLMQYVSAVGAMAHAPFISSVAPTFFGVDRFTDLPSIKDLKSVFEGPAYTKWRSLRESEDGRYLGLTA
PRFLARLPYDPVENPIKGFNYKEDISTDHEHYLWGNTAYLMGTALTDSFAKYRWCPNIIGPQSGGAITDLPVHVYEAMGQ
LQAKIPTEVLITDRREYEMAEEGFITLTMRKDSDNAAFFSANSVQKPKVFPNTKEGKEAETNYKLGTQLPYMFIINRLAH
YIKVLQREQIGSWKERQDLERELNTWIKQYIADQENPPADVRSRRPLRAAQIKVLDVEGEPGWYQVTMSVRPHFKYMGAN
FELSLVGRLDKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec18 YP_851426.1 hypothetical protein Not tested PAI II APEC-O1 Protein 4e-171 71
aec18 AAQ96712.1 Aec18 Not tested AGI-1 Protein 3e-171 71
HH0247 NP_859778.1 hypothetical protein Not tested HHGI1 Protein 2e-146 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_032410 YP_006647897.1 hypothetical protein VFG2093 Protein 0.0 78
PCC21_032410 YP_006647897.1 hypothetical protein VFG2475 Protein 2e-154 60