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Name : PCC21_029330 (PCC21_029330) Accession : YP_006647589.1 Strain : Pectobacterium carotovorum PCC21 Genome accession: NC_018525 Putative virulence/resistance : Virulence Product : General secretion pathway protein D Function : - COG functional category : - COG ID : - EC number : - Position : 3297271 - 3299325 bp Length : 2055 bp Strand : - Note : - DNA sequence : ATGGAGACCACTAATTTGTTTAGCAAGGGACAGGGATTTTTTAAGCGTCAGGTTTTTTCGAAGAATAAAAACCAGTGGCT TGATCATGTACGCCGTAAGAGCATGTTATTGCTCAGCGGGAGCGTTTTGCTGATGGCCTCATCATTGGCGTGGAGCGCCG AATTCTCCGCCAGTTTTAAAGGCACAGATATTCAGGAGTTTATTAATACCGTCAGTAAGAATTTAAATAAGACGGTCATT ATCGATCCGTCGGTCAGCGGAACGATTACCGTACGCAGCTATGACATGATGAATGAAGAACAGTATTACCAGTTCTTCCT TAGCGTGCTGGATGTCTATGGATTCACCGTGATTCCGATGGATAACAACGTCCTGAAAATCATTCGCTCGAAGGATGCGA AATCGACGTCTATGCCGCTGGCCACGGATGCACAGCCGGGCGTTGGTGATGAGGTTGTGACGCGCGTCGTGCCCGTCAAC AACGTCGCCGCGCGTGATTTGGCACCGCTGCTGCGTCAGTTGAATGACAACGCTGGTGCCGGGAGCGTGGTGCATTACGA ACCGTCGAACGTGCTGCTGATGACCGGCCGCGCGGGGGTGATCCAGCGGCTGATGACGATTGTCGAACGGGTTGATCAGA CGGGCGATCGGAATGTGACCAGCATACCGTTGTCTTACGCTTCTTCGACGGAAGTGGTGAAGATGGTGAATGAGCTGAAC AAGATGGATGAGAAATCCGCTTTGCCCGGCATGCTGACCGCCAACGTGGTGGCGGACGAACGCACCAACTCAGTGCTGGT GCGCGGTGAGCCGAATTCACGCCAGCGCGTGATTGATATGGTCAAGCAGCTCGATCGCCAACAGGCGGTTCAGGGCAACA CCAAAGTTATCTACCTCAAATACGCCAAAGCCGCCGATCTGGTCGAAGTGCTCACCGGTGTCGGCGACAGTATCCAAACC GATCAGCAAAATGCGCTGCCTGCACTGCGCAAAGACATTTCGATTAAGGCACACGAACAAACCAACTCGCTGATTGTGAA TGCTGCACCGGACATCATGCGCGATCTGGAACAGGTGATTGCGCAATTGGATATCCGTCGTCCGCAGGTCTTGGTCGAAG CGATCATCGCGGAAGTACAGGATGCCGATGGCATGAATCTGGGCGTTCAATGGGCGAATAAAAATGCCGGCGTAACGCAA TTCACGAATACGGGATTACCGATCACAACAATGATGGCAGGGGCAGACCAGTTTCGGCGTGATGGAACACTTGGCACGGC CGCGACAACGGCACTTGGCGGTTTCAACGGAATTGCTGCCGGTTTCTATCAGGGCAACTGGGGCATGCTGATGACGGCAC TGTCCAGCAACAGCAAGAACGATATTCTGGCAACGCCCAGTATTGTGACGCTGGACAATATGGAAGCAACGTTTAACGTC GGTCAGGAAGTACCTGTGTTGGCCGGTTCGCAAACGACATCCGGCGATAACGTTTTCCAAACGGTAGAACGTAAAACGGT CGGTATCAAGCTGAAGGTGAAACCCCAAATCAACGAAGGCGACTCCGTTCTGCTGGAAATTGAACAGGAAGTCTCCAGCG TGGCTGATTCGGCCTCCAGCAGCAGCGCCAACCTCGGGGCAACATTCAATACGCGTACCGTGAATAACGCGGTACTGGTC AGCAGTGGCGACACCGTAGTGGTGGGCGGTTTGCTGGATAAAAGTACCAATGAATCTGCGAGTAAAGTGCCTCTGTTGGG CGATATTCCCGTGTTGGGATATTTGTTCCGTTCCAACAGCACGGAAACGAAAAAGCGTAACCTGATGCTGTTTATCCGTC CTTCCATTATTCGCGATCGCAGCCAATACCAGAGCGCCTCTGCCAGTAAATATCACTCGTTCAATGCGGAAGAGGAGAAG CAGCGAGACGTGAACGGCAGCGAAGGGGGGCTCTTGAATAACGATTTGCTGCGTTTGCCGGAAGGTGGAAATGCCTATAC GTTCCGTCAGGTTCAGTCCTCTATTGTGGCGTTTTATCCGGCGGGCGGGAAATGA Protein sequence : METTNLFSKGQGFFKRQVFSKNKNQWLDHVRRKSMLLLSGSVLLMASSLAWSAEFSASFKGTDIQEFINTVSKNLNKTVI IDPSVSGTITVRSYDMMNEEQYYQFFLSVLDVYGFTVIPMDNNVLKIIRSKDAKSTSMPLATDAQPGVGDEVVTRVVPVN NVAARDLAPLLRQLNDNAGAGSVVHYEPSNVLLMTGRAGVIQRLMTIVERVDQTGDRNVTSIPLSYASSTEVVKMVNELN KMDEKSALPGMLTANVVADERTNSVLVRGEPNSRQRVIDMVKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTGVGDSIQT DQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRPQVLVEAIIAEVQDADGMNLGVQWANKNAGVTQ FTNTGLPITTMMAGADQFRRDGTLGTAATTALGGFNGIAAGFYQGNWGMLMTALSSNSKNDILATPSIVTLDNMEATFNV GQEVPVLAGSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADSASSSSANLGATFNTRTVNNAVLV SSGDTVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSTETKKRNLMLFIRPSIIRDRSQYQSASASKYHSFNAEEEK QRDVNGSEGGLLNNDLLRLPEGGNAYTFRQVQSSIVAFYPAGGK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 2e-125 | 45 |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 8e-117 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PCC21_029330 | YP_006647589.1 | General secretion pathway protein D | VFG2047 | Protein | 1e-115 | 44 |
