|
Name : PCC21_029320 (PCC21_029320) Accession : YP_006647588.1 Strain : Pectobacterium carotovorum PCC21 Genome accession: NC_018525 Putative virulence/resistance : Virulence Product : EtpE Function : - COG functional category : - COG ID : - EC number : - Position : 3295778 - 3297274 bp Length : 1497 bp Strand : - Note : - DNA sequence : ATGAGTGACGTTGCCTCTCAGATGATAGAACTACGCCCGATATTGCCTTTTGCCTATGCGCGATCGCAGCAAATTCTGCT GTTGCAGCGGGAAAATGATGCGAGCTTACAGACGATTTGCGTCGCGCAAACGCCGCCCTCTGCCTTGCTGGAAGCGCGTC GGATTGCGGGCTGTTCGCTCAGGATTGAACGCGTTACGGAAGACGAGTTTGAACGGCAATTAGTCATTAGCTATCAGCGC GACTCGGAAGAGGCACGCCGTCTGATGGAAGACATCGGCAATGAAATGGACTTTTATACGCTGGTGGAGGAATTGCCAGA CAGCGACGATTTGCTTGATGCCGACGACGACGCGCCGATTATCCGCCTCATCAACGCCATGTTGACCGAAGCGATTAAGA ATAAAGCGTCGGATATTCATATCGAAACGTATGAGCGCTATTTGCTGATCCGCTTCCGCGTTGACGGCGTACTGCGTGAA ATTTTGCGTCCACAGCGTAAGTTGGCATCGCTGCTGGTGTCGCGTATCAAGGTCATGGCAAAGCTGGATATTGCGGAAAA GCGTATTCCGCAGGATGGACGTATGGCGCTGCGAGTGGGGGGACGAGCGATTGACGTTCGTGTCTCCACGCTGCCGTCGA ACTACGGTGAGCGCGTCGTGCTGCGCTTGCTGGATAAAAACAGCGTTAAGCTCGATCTTGAACTGTTGGGTATGTCGGAA CGCAATCGGCAACTGCTGGACAGCCTGATTCACCGTCCCCATGGCATTATTCTGGTCACCGGCCCGACAGGATCGGGGAA AAGTACCACGCTTTACGCTGCGCTCAGCCGCCTGAATGCGTCAGAACGTAACATCATGACGGTGGAAGATCCCATCGAGT ATGAACTGGAAGGCATCGGGCAAACGCAGGTCAATGCCAAGGTTGATATGACGTTTGCCCGCGGGCTGCGTGCCATTCTG CGTCAGGACCCGGACGTCGTACTGGTGGGGGAAATTCGTGATGGTGAAACGGCGCAGATTGCCGTGCAGGCCTCGTTGAC TGGTCACCTTGTGTTATCCACACTGCATACCAATAGTGCGCTGGGCGCGCTGTCTCGTTTGCAGGATATGGGCGTCGAAC CATTCCTGCTGTCAACCTCTCTGCTGGGTGTACTCGCGCAGCGTCTGGTCAGGACGCTGTGTTCTGACTGTAGCCAGCCG CAGCCGGTCGATCCGGTTCAGGCTGAACAGATGGGGATCGCGCCCGGTACGCTGCTGCATAATCCCGTTGGCTGTCCGCA GTGTAGCTTTACTGGCTACCGGGGACGTATCGGTATTCATGAACTGGTGCTGATTAATGACGACGTTCGTGCCGCGATCC ACCGCAGTGACGGTGAAATGGCGATTGCGCAGATTCTGGGGGGGAGTCGCACCACTATCCGTCAGGACGGGTTGGATAAG GTACTGGCGGGGCTCACGACCTGGGAAGAAGTGATCCGCGTAACCAAAGAGGAATGA Protein sequence : MSDVASQMIELRPILPFAYARSQQILLLQRENDASLQTICVAQTPPSALLEARRIAGCSLRIERVTEDEFERQLVISYQR DSEEARRLMEDIGNEMDFYTLVEELPDSDDLLDADDDAPIIRLINAMLTEAIKNKASDIHIETYERYLLIRFRVDGVLRE ILRPQRKLASLLVSRIKVMAKLDIAEKRIPQDGRMALRVGGRAIDVRVSTLPSNYGERVVLRLLDKNSVKLDLELLGMSE RNRQLLDSLIHRPHGIILVTGPTGSGKSTTLYAALSRLNASERNIMTVEDPIEYELEGIGQTQVNAKVDMTFARGLRAIL RQDPDVVLVGEIRDGETAQIAVQASLTGHLVLSTLHTNSALGALSRLQDMGVEPFLLSTSLLGVLAQRLVRTLCSDCSQP QPVDPVQAEQMGIAPGTLLHNPVGCPQCSFTGYRGRIGIHELVLINDDVRAAIHRSDGEMAIAQILGGSRTTIRQDGLDK VLAGLTTWEEVIRVTKEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 6e-134 | 63 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-134 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PCC21_029320 | YP_006647588.1 | EtpE | VFG2048 | Protein | 2e-134 | 62 |
| PCC21_029320 | YP_006647588.1 | EtpE | VFG0182 | Protein | 5e-135 | 62 |
| PCC21_029320 | YP_006647588.1 | EtpE | VFG1876 | Protein | 2e-123 | 56 |
| PCC21_029320 | YP_006647588.1 | EtpE | VFG2426 | Protein | 6e-72 | 46 |
