Gene Information

Name : PCC21_027350 (PCC21_027350)
Accession : YP_006647391.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3079152 - 3079808 bp
Length : 657 bp
Strand : -
Note : -

DNA sequence : 
TTGATTAGCGTTTTTCTTGTTGATGACCATGAACTGGTGCGGGCAGGGATACGACGCATTCTTGACGATATCAAAGGTCT
GAAAGTGGTTGGTGAGGCATGCTGCGGTGAAGATGCTGTCAAATGGTGCCGAAGCAATGATGTAGATGTTGTCCTGATGG
ACATGAGCATGCCGGGCATCGGTGGGCTTGAAGCAACGCGCAAGATCCTGCGTTTTACGCCAGATATAAAAGTCATCATG
CTCACTATTTATACTGAGAATCCGCTACCTGCTAAAGTGATGCAGGCCGGTGCCGCGGGATATGTGAGTAAAGCTGCCGC
CCCTCAGGAAGTGATCTCCGCCATTCGCGCTGTGCATGCTGGTAAACGGTATATTGCTTCTGATATTGCGCAGCAGATGG
CATTAAGCCAGTTGGAGCCGCAGACGGATGCGCCGCTGGAGTGTTTGTCTGAACGCGAATTACAGATTATGCTAATGATA
ACGAAGGGACAGAAAGTGACTGAAATTTCAGATCAGCTTAATCTTAGCCCTAAAACAGTGAACAGCTATCGCTACCGTAT
GTTCAGCAAGCTGAATATCAACGGCGATGTAGAGTTGACTCATCTGGCTATCAAGCATGGGCTTTTTACCGCGGAGACAT
TGTTAAGTAGTGAGTGA

Protein sequence : 
MISVFLVDDHELVRAGIRRILDDIKGLKVVGEACCGEDAVKWCRSNDVDVVLMDMSMPGIGGLEATRKILRFTPDIKVIM
LTIYTENPLPAKVMQAGAAGYVSKAAAPQEVISAIRAVHAGKRYIASDIAQQMALSQLEPQTDAPLECLSERELQIMLMI
TKGQKVTEISDQLNLSPKTVNSYRYRMFSKLNINGDVELTHLAIKHGLFTAETLLSSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00302 YP_008207767.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR25 Protein 2e-40 47
BJAB0868_00306 YP_008211632.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR26 Protein 2e-40 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_027350 YP_006647391.1 response regulator VFG1889 Protein 3e-47 50