Gene Information

Name : PCC21_026900 (PCC21_026900)
Accession : YP_006647346.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3036510 - 3037286 bp
Length : 777 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTGCCTTGCCTAATTATTTTCCTATCACCGCCCTGCTTCGCACACTGCGTTACGGTTTAGCCATCGGTTTATTGTT
CATGGCGCCATCGGTATGGGCACAGCTTCCCGGTATTGTGACGCAACCTCTGCCTAACGGTGGACAGAGCTGGACGCTAT
CCGTACAGACGCTGGTTTTACTCACGTCATTAACGTTTATTCCTGCTGCATTATTAATGATGACCAGCTTCACCCGAATC
ATCATTGTACTGAGCTTGTTACGTAACGCGCTGGGTACCCCAACCGCACCACCGAACCAGGTATTGCTCGGATTAACACT
TTTCCTGACATTTTTTGTCATGTCGCCCGTATTAAACCGCGTTTATGACGAAGCTTATCTTCCCTTCAGTCAGGATCAAA
TCAGTATGGAAGTCGCCATCGAACGTGGCGCGGAACCCGTGCGTGAGTTCATGCTGCGGCAAACCCGGGAAACCGATCTG
GCGTTATTTACCCGACTGGCAGAAATCCCAGAGATTCAGGGACCTGAAGCGGTGCCCATGCGTGTGCTTCTCCCCGCATT
TGTGACAAGTGAGCTAAAAACTGCTTTCCAAATTGGTTTCACCGTGTTTATCCCTTTCCTCATCATTGACCTCGTTGTTG
CCAGCGTATTGATGGCGCTAGGGATGATGATGGTTCCTCCGGCAACTATTTCATTGCCTTTTAAACTCATGCTTTTCGTA
TTAGTCGATGGCTGGCAGCTGCTACTCGGTTCATTAGCCCAGAGTTTTTATAGTTAG

Protein sequence : 
MSALPNYFPITALLRTLRYGLAIGLLFMAPSVWAQLPGIVTQPLPNGGQSWTLSVQTLVLLTSLTFIPAALLMMTSFTRI
IIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISMEVAIERGAEPVREFMLRQTRETDL
ALFTRLAEIPEIQGPEAVPMRVLLPAFVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFV
LVDGWQLLLGSLAQSFYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-23 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-23 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-23 45
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 4e-23 44
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 3e-17 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 3e-17 44
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-26 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-27 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-16 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-16 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 6e-25 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-25 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-27 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-27 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-27 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-28 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-28 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 3e-18 41
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 9e-27 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-18 41
escR AAK26700.1 EscR Virulence LEE Protein 1e-26 41
escR AAL57527.1 EscR Virulence LEE Protein 1e-26 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 1e-26 41
escR CAI43889.1 EscR protein Virulence LEE Protein 1e-26 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-26 41
escR AAC31528.1 L0049 Virulence LEE Protein 1e-26 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-26 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 1e-26 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-26 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-26 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-26 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_026900 YP_006647346.1 flagellar biosynthesis protein FliP VFG2338 Protein 6e-79 83
PCC21_026900 YP_006647346.1 flagellar biosynthesis protein FliP VFG2494 Protein 1e-64 70
PCC21_026900 YP_006647346.1 flagellar biosynthesis protein FliP VFG1259 Protein 1e-51 57
PCC21_026900 YP_006647346.1 flagellar biosynthesis protein FliP VFG2016 Protein 7e-48 56
PCC21_026900 YP_006647346.1 flagellar biosynthesis protein FliP VFG0188 Protein 2e-27 44
PCC21_026900 YP_006647346.1 flagellar biosynthesis protein FliP VFG0044 Protein 8e-28 42
PCC21_026900 YP_006647346.1 flagellar biosynthesis protein FliP VFG0827 Protein 7e-27 41