Gene Information

Name : PCC21_025700 (PCC21_025700)
Accession : YP_006647226.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : hemin transport system permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2910025 - 2911029 bp
Length : 1005 bp
Strand : +
Note : -

DNA sequence : 
ATGACGTCACGCTTTCACCCGCGCACGTGGTTGATCGCACTGCTGTTACTGATGGTGGCACTGATGGTCGGTGCCGCCAA
CATGGGCGCGCTGACCCTATCGCTCAAGATGTTATGGCAAACGCCGCTTGACGATCCAATCTGGCATATCTGGTTGAATA
TCCGCGTACCCCGTGTGCTGCTGGCGATCCTCGTCGGCGGCGCGTTGGCTTGCTCTGGCGCGATTATGCAAGGGTTATTT
CGCAATCCACTCGCCGATCCCGGCCTGCTTGGGATCAGCAGCGGTGCCGCACTCTGCGTCGCACTAACCATTGTGCTGCC
GCTTGGCCTTCCCCCGCTGCTGGCGCTTTACGGCCCGATGTTTGCCGCTTTCGCGGGCAGTCTGGCAATTACGGCGATTA
TTTTCATCCTCAGCCGCTCCGAACAGGGTGGATTAACGCGATTATTGCTGGCAGGCATCGCGCTCAATGCGCTGTGCCTT
GCCCTCATCGGCGTGTTGACCTACATCAGTACCGATCAGCAACTGCGCCAGTTCTCACTGTGGGGAATGGGGAGCCTTGG
ACAGGCACAGTGGCCCATGCTGCTGGTTGCCAGCACGTTGGTCATCCCTGCCACGATCGCCACGTTATACTGCGCGCACC
GCCTGAACGTGTTGCAATTAGGGGACGAAGAGGCGCACTACCTTGGCGTTAATGTGAAACGCACCAAGTACACGCTACTG
CTGCTCAGTTCGCTGTTGGTTGGCGTAGCTGTGGCGGTCAGCGGCGTGATCGGATTTATCGGGCTTATCATTCCACACCT
GATGCGCATGCATCTCGGTGCCGACCATCGCTGGCTCCTTCCCGGTTCTATCCTCGGTGGTGCCTGTCTGCTGCTGTTTG
CCGATACGCTGGCACGCACGCTGCTTTCTCCGGCAGAAATGCCCGTTGGGTTGTTAAGCAGCCTGATTGGCGGGCCGTAT
TTCTTATGGCTGATCGTTCAGCATAAAGGGCGGGGCAATGACTGA

Protein sequence : 
MTSRFHPRTWLIALLLLMVALMVGAANMGALTLSLKMLWQTPLDDPIWHIWLNIRVPRVLLAILVGGALACSGAIMQGLF
RNPLADPGLLGISSGAALCVALTIVLPLGLPPLLALYGPMFAAFAGSLAITAIIFILSRSEQGGLTRLLLAGIALNALCL
ALIGVLTYISTDQQLRQFSLWGMGSLGQAQWPMLLVASTLVIPATIATLYCAHRLNVLQLGDEEAHYLGVNVKRTKYTLL
LLSSLLVGVAVAVSGVIGFIGLIIPHLMRMHLGADHRWLLPGSILGGACLLLFADTLARTLLSPAEMPVGLLSSLIGGPY
FLWLIVQHKGRGND

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecD AAL08452.1 FecD Virulence SRL Protein 5e-21 41
fecC AAL08453.1 FecC Virulence SRL Protein 1e-18 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_025700 YP_006647226.1 hemin transport system permease BAC0163 Protein 3e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_025700 YP_006647226.1 hemin transport system permease VFG0922 Protein 2e-69 66
PCC21_025700 YP_006647226.1 hemin transport system permease VFG1043 Protein 3e-21 41
PCC21_025700 YP_006647226.1 hemin transport system permease VFG1044 Protein 7e-19 41
PCC21_025700 YP_006647226.1 hemin transport system permease VFG0926 Protein 4e-19 41