Gene Information

Name : PCC21_024250 (PCC21_024250)
Accession : YP_006647081.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : redoxin domain-containing protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2743718 - 2744221 bp
Length : 504 bp
Strand : +
Note : -

DNA sequence : 
ATGTCACAGAACGTACATTTTCAAGGCAATCCTGTGCCAGTAGCAGGGTCATTCCCAGCCAAAGGAAGCAAAGCCCCGGC
ATTTACTCTGGTGGCTAAAGATCTGTCCGATACCCCGCTGAGCAACTATGCTGGCAAACGCAAAATCCTGAACATTTTCC
CAAGCATCGATACTGGTGTTTGTGCCACGTCCGTGCGCAAATTCAACCAACTGGGTTCTGAGCTGGATAATACCGTTGTT
CTGTGTATCTCTTCCGATCTGCCGTTCGCGCAGTCCCGTTTTTGCGGCGCAGAAGGTCTGAACAACGTCGTTGTACTGTC
TACCCTGCGTGGCGGTGAGTTCAAAGAAAACTATGGCGTTGCTATCGCCGATGGCGCGCTGAAAGGTCTGACTGCTCGTG
CGGTTGTTGTACTGGATGAAAACGACAACGTGCTGCACAGCGAACTGGTGAACGAAATCACCACTGAACCAGACTACGAC
GCAGCACTGGCTGTTCTGAAATAA

Protein sequence : 
MSQNVHFQGNPVPVAGSFPAKGSKAPAFTLVAKDLSDTPLSNYAGKRKILNIFPSIDTGVCATSVRKFNQLGSELDNTVV
LCISSDLPFAQSRFCGAEGLNNVVVLSTLRGGEFKENYGVAIADGALKGLTARAVVVLDENDNVLHSELVNEITTEPDYD
AALAVLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tpx YP_001216305.1 thiol peroxidase Not tested VPI-1 Protein 6e-36 50
tpx NP_230472.1 thiol peroxidase Virulence VPI-1 Protein 2e-36 50
tagD AAK20751.1 toxR-activated gene D protein Virulence VPI Protein 4e-36 50
tagD AAK20781.1 toxR-activated gene D protein Virulence VPI Protein 2e-36 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_024250 YP_006647081.1 redoxin domain-containing protein VFG0087 Protein 7e-37 50