Gene Information

Name : PCC21_022820 (PCC21_022820)
Accession : YP_006646938.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2598214 - 2598759 bp
Length : 546 bp
Strand : -
Note : -

DNA sequence : 
ATGGAAATGTCTACCCTGAAACACATCGAACAGACCCCTTCGCTTTACCCAGCGTTATCTGTCGATTGGGAACAGGTGTT
TCGTCAACACGGAAAGAAATTGCATAACTTTATCCGCAAGCGCGTCAGCAACCATGACGACGTGGAGGATTTACAGCAAA
TGACCTATCTGGAAGTGCTCAAACATCAGGATAAATTTGCGGGAGCATCGCGGCCGGAGACGTGGGTATTCGGTATTGCC
CTCAACCTGGTTCGCAATTATTTCAAGCAGGCACGCCAGCGCGCTCAGGAAATGGGCGATGAGATGCTGGAACATATTGC
GATAGAACTCGATCCCGGTGCTATCACCGAAAGTCAGCGGTCCTTGAAACGCGCGATGGATGCCATCGTCTCACTGCCTG
AAGATACCCGTCAGATGCTGATGCAATTGCTGGATACCGATGCCAGCTATCAGGATCTCGCATTGCAGTTGGAGATCCCG
ATCGGTACGGTGCGGTCGCGGCTGTCTCGTGCCCGAGGTGTGATTCGTCAGGCTGTTGAATCCTGA

Protein sequence : 
MEMSTLKHIEQTPSLYPALSVDWEQVFRQHGKKLHNFIRKRVSNHDDVEDLQQMTYLEVLKHQDKFAGASRPETWVFGIA
LNLVRNYFKQARQRAQEMGDEMLEHIAIELDPGAITESQRSLKRAMDAIVSLPEDTRQMLMQLLDTDASYQDLALQLEIP
IGTVRSRLSRARGVIRQAVES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpL AAD24681.1 sigma factor HrpL Virulence Hrp PAI Protein 3e-45 58
hrpL ABA47271.1 HrpL Virulence S-PAI Protein 4e-32 50
hrpL AAT96335.1 HrpL Virulence S-PAI Protein 3e-32 47
hrpL AAT96295.1 HrpL Virulence S-PAI Protein 3e-32 47
hrpL AAT96254.1 HrpL Virulence S-PAI Protein 3e-32 47
hrpL NP_791231.1 RNA polymerase sigma factor HrpL Virulence Hrp PAI Protein 3e-25 45
hrpL AAT96137.1 HrpL Virulence T-PAI Protein 2e-25 44
hrpL AAT96191.1 HrpL Virulence T-PAI Protein 2e-25 44
hrpL AAG33875.2 HrpL Virulence Hrp PAI Protein 2e-24 44
hrpL ABQ88350.1 HrpL Virulence Hrp PAI Protein 4e-25 43
hrpL AAA17652.1 putative alternate sigma factor Virulence Hrp PAI Protein 4e-25 43