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Name : PCC21_022790 (PCC21_022790) Accession : YP_006646935.1 Strain : Pectobacterium carotovorum PCC21 Genome accession: NC_018525 Putative virulence/resistance : Virulence Product : HrpS Function : - COG functional category : - COG ID : - EC number : - Position : 2594376 - 2595446 bp Length : 1071 bp Strand : - Note : - DNA sequence : ATGAATCATTATTACCGTCAGGACAGACAGCACGATTCGTTATTAGCGCATTCGTTATCGGAACATTCGTCATTAGAAAA GCCATCATTAGAAAAAGCTCGCTCGTCAGTAGACTATTTCCCGCCATCGTCGGGACATTCCACACACACAGCTGATGATA TTCATTCATCGCTCGCCCCCATCATCAATGTTATTGCGCCTCTCAATGTCGACATCGTGCTGGAAGGTGAAACCGGTACG GGGAAAGACACGCTGGCTAACCGCATTCATCAACTTTCTCGATGCAGCGGCCCGCTGGTGGCGGTGAACTGCGCCGCCGT GCCGGAAAATTTGGCCGAAAGTGAACTGTTTGGCGTGGTTTCGGGTGCCTATACTGGCGCGAACCGCTCCCGCGCCGGCT ATCTGGAAAGTGCAGATAAAGGCATTCTGTTTCTTGATGAGATCGACAGTATGCCCATGACGCTGCAGGCCAAGATGCTG CGCGTGCTGGAAAGTCGTGGCGTAAAGCGGCTGGGAAGCACCCAGTTCACGCCCGTGGATATGCGTGTGATTGTGGCGAC GCAAACGCCGCTGCTGCAACTGGTGGAAAAAGGGTTGTTTCGCCGCGATCTCTATTTCCGTCTGGATACCGTAAAGATTC AACTGCCAACGCTGCGCTCCCGCAGCGATCTCATTCTGCCGCTGTTTCAGCGTTTTAGTCAGGAAGCCGCTGTGCGCCTG AAAATGACGCTGCCACCGATGACGGCGGAAATTCACGAACAGCTGTTGACTCACAGCTGGCCGGGTAATATCCGCGAGCT GAAAGCCGCGGCGGATCGCTGGGCGCTGGGACTGTCGCCTTTGGCTGAAATTCAGCCGCTGCTGCATCCGCGTCCTTTGC AGTTGAAAGACCGCTTAAAGCGGATTGAAAAATTTCTGATTCAGGATGCGCTGCGCCGCCACGACCACTGCATTGACGAT GTGATTGTGGAGCTGGGGATCCCCAAGCGGACGCTTTATCACCGCCTGAAAGTGCTGAACGTGACGGCGCGAGAGATGTG CGCAGGGGGCGGGGAAGCCTGTCAGGCATGA Protein sequence : MNHYYRQDRQHDSLLAHSLSEHSSLEKPSLEKARSSVDYFPPSSGHSTHTADDIHSSLAPIINVIAPLNVDIVLEGETGT GKDTLANRIHQLSRCSGPLVAVNCAAVPENLAESELFGVVSGAYTGANRSRAGYLESADKGILFLDEIDSMPMTLQAKML RVLESRGVKRLGSTQFTPVDMRVIVATQTPLLQLVEKGLFRRDLYFRLDTVKIQLPTLRSRSDLILPLFQRFSQEAAVRL KMTLPPMTAEIHEQLLTHSWPGNIRELKAAADRWALGLSPLAEIQPLLHPRPLQLKDRLKRIEKFLIQDALRRHDHCIDD VIVELGIPKRTLYHRLKVLNVTAREMCAGGGEACQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | AAD24684.1 | sigma-54-dependent enhancer-binding protein HrpS | Virulence | Hrp PAI | Protein | 8e-88 | 67 |
| unnamed | AAT96324.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 5e-85 | 61 |
| unnamed | AAT96363.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 2e-84 | 61 |
| unnamed | AAT96283.1 | HrpS/HrpR-like protein | Not tested | S-PAI | Protein | 5e-85 | 61 |
| hrpRS | ABA47311.1 | HrpRS | Virulence | S-PAI | Protein | 8e-87 | 60 |
| hrpR | AAT96162.1 | HrpR | Virulence | T-PAI | Protein | 3e-76 | 59 |
| hrpR | AAT96216.1 | HrpR | Virulence | T-PAI | Protein | 3e-76 | 59 |
| hrpR | AAC34752.1 | HrpR | Virulence | Hrp PAI | Protein | 2e-78 | 58 |
| hrpR | NP_791206.1 | type III transcriptional regulator HrpR | Virulence | Hrp PAI | Protein | 2e-77 | 57 |
| hrpR | AAC35799.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 7e-75 | 57 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 1e-73 | 55 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 1e-73 | 55 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 4e-74 | 54 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 6e-72 | 54 |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 4e-71 | 54 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 4e-71 | 54 |
| hrpR | ABQ88368.1 | HrpR | Virulence | Hrp PAI | Protein | 2e-72 | 54 |
| hrpR | AAA17651.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 2e-72 | 54 |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 5e-73 | 52 |
