Gene Information

Name : PCC21_019770 (PCC21_019770)
Accession : YP_006646633.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : periplasmic chelated iron-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2217506 - 2218420 bp
Length : 915 bp
Strand : -
Note : -

DNA sequence : 
ATGATTGGTTTTCACGCTCATTTACCTGCCCTATTCCGTCGTATCGCGCTGCCGTGCGCTTTACTGCTTTTAGCCAGTAC
CTCCGCCCAGGCGGCTGAAAAGCTTAAAGTCATCACGACCTTTACCATCATTCAGGATATCGCACAGAATATTGCGGGCG
ATGCGGCGACGGTTGAATCCATCACCAAACCCGGTGCGGAGATTCATGATTATCAACCGACACCACGTGATATTGTTAAA
ACACAGTCTGCACAGCTGGTGCTGTGGAACGGCATGAATCTCGAACGTTGGTTTACACGCTTTTTCGAGAACGTAAAAAA
TGTGCCCGCTGTTGTGGTGACGGAAGGCATCACGCCGCTTCCTATCCGCGAAGGTGCCTATAATGGCAACCCAAACCCGC
ATGCCTGGATGTCGCCCTCCAACGCATTAATCTATATTGAAAATATCCGCAAAGGTCTGGTGCAGGCCGATCCCGCGAAT
GCAGAGACGTATAACCGTAATGCCAAAGCCTATGCGGAAAAAATTAAGGCTCTCGACGCGCCGCTGCGTGAACGTCTTGC
CCGTATCCCAGAACAGCAGCGCTGGTTAGTCACCAGTGAAGGGGCGTTCAGCTATCTGGCAAAAGATTATCAGTTCAATG
AAGTCTATCTCTGGCCAATCAATGCCGACGAACAAGGTTCACCGCAGCAGGTGCGTCGGGTTATCGATACCGTGCGTGAG
AAGACTATCCCTGTTGTATTCAGTGAAAGCACCGTTTCCGATAAGCCAGCAAAACAGGTCAGTAAAGAAACGGGGGCGAA
ATATGGCGGCGTGCTGTATGTTGATTCGCTGTCTACAGAGAAAGGCCCAGTGCCAACCTATATCGACCTGTTAAAAGTGA
CGGTGGAAACTATCGCTAAAGGATTTAATCAATGA

Protein sequence : 
MIGFHAHLPALFRRIALPCALLLLASTSAQAAEKLKVITTFTIIQDIAQNIAGDAATVESITKPGAEIHDYQPTPRDIVK
TQSAQLVLWNGMNLERWFTRFFENVKNVPAVVVTEGITPLPIREGAYNGNPNPHAWMSPSNALIYIENIRKGLVQADPAN
AETYNRNAKAYAEKIKALDAPLRERLARIPEQQRWLVTSEGAFSYLAKDYQFNEVYLWPINADEQGSPQQVRRVIDTVRE
KTIPVVFSESTVSDKPAKQVSKETGAKYGGVLYVDSLSTEKGPVPTYIDLLKVTVETIAKGFNQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-91 66
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 2e-91 66
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 2e-91 66
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 2e-91 66
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 2e-91 66

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_019770 YP_006646633.1 periplasmic chelated iron-binding protein BAC0439 Protein 1e-111 84
PCC21_019770 YP_006646633.1 periplasmic chelated iron-binding protein BAC0349 Protein 1e-91 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_019770 YP_006646633.1 periplasmic chelated iron-binding protein VFG0525 Protein 1e-91 66