Gene Information

Name : PCC21_019760 (PCC21_019760)
Accession : YP_006646632.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2216619 - 2217509 bp
Length : 891 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTAGTGATCGAGCAGTACAGTCATTAGAAGTCAATGATGTTTCGGTTACTTACAGCAACGGGCATCAGGCTATTCG
CCATGCCTCTTTTTCCCTGACTGGCGGTACGATTTGCGCCTTGGTTGGCGTAAACGGCAGTGGAAAATCAACGTTGTTCA
AAAGCATCATGGGGTTGGTCAAGCCAACCTCAGGGCAGGTACTGCTCAACCAGCAACCGATCTACCAGGCACTGAAGCAG
AATCTGGTTGCTTATGTTCCACAAACAGAAGACGTGGACTGGAATTTCCCCGTTCTGGTTTCCGACGTGGTCATGATGGG
ACGCTACGGGAGAATGAATTTCCTGCGTATTCCCAGTAAACAGGACCGCGCTATTGTCGCGGAGTCGCTGGAGCGCGTCG
GGTTATCAACGCTGCAACATCGCCAGATCGGTGAGCTGTCCGGTGGACAGAAAAAGCGCGTCTTTCTGGCACGGGCGCTG
GCTCAACAAGGCAGCGTATTGCTGCTGGATGAGCCTTTCACCGGCGTAGACGTTAAAACAGAGAACGCGATTATCGACCT
GCTTCGCACCTTGCGCGATGAAGGGCATTTGATTTTGGTGGCAACCCATAACCTCGGTAGCGTTCCTGAGTTTTGTGACA
ACGTTATTTTGGTCAACCGCACCGTGTTAGCCGCAGGACCGACACACAGCACCTTTACCCAAAGCAATTTGGAGAAAACG
TTCGGTGGCGTGCTGCGACATATCAACCTCGGGGGATCTCATCTTCACGATGATGACGATGTCCGTTCGGTGACGGTGTT
AACAGACGATGAGCGTCCTGCCGTGTTCTATGGATCGACCAAGAGCGATCCTCCTGCGTCACGCGCAATACCGGAGGAGA
AAAAGCCCTGA

Protein sequence : 
MSSDRAVQSLEVNDVSVTYSNGHQAIRHASFSLTGGTICALVGVNGSGKSTLFKSIMGLVKPTSGQVLLNQQPIYQALKQ
NLVAYVPQTEDVDWNFPVLVSDVVMMGRYGRMNFLRIPSKQDRAIVAESLERVGLSTLQHRQIGELSGGQKKRVFLARAL
AQQGSVLLLDEPFTGVDVKTENAIIDLLRTLRDEGHLILVATHNLGSVPEFCDNVILVNRTVLAAGPTHSTFTQSNLEKT
FGGVLRHINLGGSHLHDDDDVRSVTVLTDDERPAVFYGSTKSDPPASRAIPEEKKP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-81 63
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-81 63
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 6e-82 63
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 5e-82 63
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-81 62

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_019760 YP_006646632.1 chelated iron transport system membrane protein BAC0440 Protein 7e-112 79
PCC21_019760 YP_006646632.1 chelated iron transport system membrane protein BAC0350 Protein 3e-82 63
PCC21_019760 YP_006646632.1 chelated iron transport system membrane protein BAC0400 Protein 1e-46 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_019760 YP_006646632.1 chelated iron transport system membrane protein VFG0526 Protein 3e-82 63