Gene Information

Name : PCC21_019750 (PCC21_019750)
Accession : YP_006646631.1
Strain : Pectobacterium carotovorum PCC21
Genome accession: NC_018525
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2215756 - 2216619 bp
Length : 864 bp
Strand : -
Note : -

DNA sequence : 
ATGATCGATATCCTGTTGCAGCCATTCAGCTATAACTACATGGTCAAGGCGATCTGGGTCAGCGCGATTGTCGGCGGCGT
GTGTGCTTTTCTTTCGGCATACCTGATGCTGAAAGGCTGGTCGTTGATGGGCGATGCGCTCTCCCATTCCGTCGTCCCCG
GTGTCGCAGGAGCCTATGCGCTGGGCTTGCCCTACGCGGCAGGTGCATTTTTTACCGGCATGCTCGCCGCACTGGCGATG
ACCCTGATCCGTCACATTACCCGATTGCGTGAAGATGCGATTATCGGCTTTATTTTCTCAACGTTTTTCGCTGTCGGCCT
GCTGATTATTTCGCTCAACCCGACATCGGTTAACGTGCAATCCATCATTTTTGGCAATATTTTGGGCATTGCCGACGAAG
ATATTCTGCAAGTTGAAATCATCATCGGCGTAACCTTCGTGATTCTGTGCCTGCTGTGGAAAGATCTGCTGGCCGTGTTC
TTTGATGAGAACCATGCCCGTTCCATTGGCCTTTCTCCGCTGAAGCTGAAAATTCTGTTCTTTACGCTTCTCAGTGCCTG
TACGGTCGCAGCGTTGCAAACTGTCGGGGCGATTTTGGTGATCGCGATGGTGATTACGCCGGGTGCCACAGCTTACCTGC
TCACCGATCGATTTGGTCGTCTGGTTGTCATTTCTATTGCACTGGGTGCGATCACCAGCGCCGTCGGGGCGTATCTAAGC
TTCTTCCTTGATGGTGCAACCGGCGGCGTGATTGTCACGTTGCAAACCGTCGTCTTCCTGTTGGCGTTTGTCTTTGCACC
CAAGCATGGGTTGCTGGCATCGCGCCGCCTGCGGTTACGCGATCAATCAGGAGATGCATTATGA

Protein sequence : 
MIDILLQPFSYNYMVKAIWVSAIVGGVCAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYALGLPYAAGAFFTGMLAALAM
TLIRHITRLREDAIIGFIFSTFFAVGLLIISLNPTSVNVQSIIFGNILGIADEDILQVEIIIGVTFVILCLLWKDLLAVF
FDENHARSIGLSPLKLKILFFTLLSACTVAALQTVGAILVIAMVITPGATAYLLTDRFGRLVVISIALGAITSAVGAYLS
FFLDGATGGVIVTLQTVVFLLAFVFAPKHGLLASRRLRLRDQSGDAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-75 66
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-75 66
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-75 66
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-75 66
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-75 66
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-41 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-41 42
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-41 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-41 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-41 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_019750 YP_006646631.1 chelated iron transport system membrane protein BAC0441 Protein 4e-101 90
PCC21_019750 YP_006646631.1 chelated iron transport system membrane protein BAC0351 Protein 8e-76 66
PCC21_019750 YP_006646631.1 chelated iron transport system membrane protein BAC0352 Protein 6e-42 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC21_019750 YP_006646631.1 chelated iron transport system membrane protein VFG0527 Protein 8e-76 66
PCC21_019750 YP_006646631.1 chelated iron transport system membrane protein VFG0528 Protein 6e-42 42